NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	ST4067_RS08675	Genome accession	NZ_CP065496
Coordinates	1672285..1672677 (-)	Length	130 a.a.
NCBI ID	WP_263604534.1	Uniprot ID	-
Organism	Streptococcus thermophilus strain 4067
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1667285..1677677

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ST4067_RS08650 (ST4067_08665)	-	1667857..1669026 (+)	1170	WP_263604533.1	tyrosine-type recombinase/integrase	-
ST4067_RS08655 (ST4067_08670)	-	1669240..1670073 (-)	834	WP_011227577.1	putative RNA methyltransferase	-
ST4067_RS08665 (ST4067_08680)	-	1670442..1670609 (+)	168	WP_002945733.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
ST4067_RS09660	-	1670662..1670925 (+)	264	WP_323851087.1	hypothetical protein	-
ST4067_RS08670 (ST4067_08685)	tadA	1671025..1671525 (-)	501	WP_084830828.1	tRNA adenosine(34) deaminase TadA	-
ST4067_RS08675 (ST4067_08690)	ssbA	1672285..1672677 (-)	393	WP_263604534.1	single-stranded DNA-binding protein	Machinery gene
ST4067_RS08680 (ST4067_08695)	-	1672883..1673110 (-)	228	WP_003095911.1	sulfurtransferase TusA family protein	-
ST4067_RS08685 (ST4067_08700)	-	1673125..1674156 (-)	1032	WP_116920363.1	YeeE/YedE family protein	-
ST4067_RS08690 (ST4067_08705)	ytpR	1674294..1674917 (-)	624	WP_002952017.1	YtpR family tRNA-binding protein	-
ST4067_RS08695 (ST4067_08710)	-	1674927..1675241 (-)	315	WP_263604535.1	thioredoxin family protein	-
ST4067_RS08700 (ST4067_08715)	-	1675238..1675522 (-)	285	WP_002952020.1	DUF4651 domain-containing protein	-
ST4067_RS08705 (ST4067_08720)	pepA	1675622..1676689 (+)	1068	WP_002952022.1	glutamyl aminopeptidase	-
ST4067_RS08710 (ST4067_08725)	proC	1676705..1677475 (+)	771	WP_011226616.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

Download Length: 130 a.a. Molecular weight: 14785.75 Da Isoelectric Point: 5.9275

                                >NTDB_id=511099 ST4067_RS08675 WP_263604534.1 1672285..1672677(-) (ssbA) [Streptococcus thermophilus strain 4067]

MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGEIRTR

KYDKDGQIHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

Download Length: 393 bp

                                >NTDB_id=511099 ST4067_RS08675 WP_263604534.1 1672285..1672677(-) (ssbA) [Streptococcus thermophilus strain 4067]

ATGTATAACAAAGTAATTTTAATTGGACGTTTGACAGCAACACCTGAAATGGTTAAGACTGCTAGTGACAGGTCTTTTAC

ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGATTTTATCACAGTAGTGGTTT

GGGGCCGTTTAGCTGAGACATTGGCATCTTATGCTAGCAAGGGAAGTTTAATTTCTCTTGATGGTGAGATTCGCACTCGT

AAGTATGATAAGGATGGTCAAATTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA

GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Streptococcus mutans UA159	78.626	100	0.792
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.762
ssbB/cilA	Streptococcus pneumoniae TIGR4	74.809	100	0.754
ssbB/cilA	Streptococcus mitis SK321	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae R6	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae Rx1	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae D39	74.046	100	0.746
ssbB/cilA	Streptococcus mitis NCTC 12261	72.519	100	0.731
ssbB	Lactococcus lactis subsp. cremoris KW2	62.5	86.154	0.538
ssbA	Bacillus subtilis subsp. subtilis str. 168	47.17	81.538	0.385
ssb	Latilactobacillus sakei subsp. sakei 23K	46.226	81.538	0.377

Detailed information NTG0511099