Detailed information NTG0510685

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: STAVA1121_RS08825
• Genome accession: NZ_CP065488
• Coordinates: 1681071..1681463 (-)
• Length: 130 a.a.
• NCBI ID: WP_011226610.1
• Uniprot ID: A0A3G6K2H6
• Organism: Streptococcus thermophilus strain AVA1121
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1676071..1686463

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STAVA1121_RS08790 (STAVA1121_08675)	dapD	1676372..1677070 (-)	699	WP_002951996.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-
STAVA1121_RS08795 (STAVA1121_08680)	-	1677156..1677910 (-)	755	Protein_1675	HAD family hydrolase	-
STAVA1121_RS08800 (STAVA1121_08685)	-	1678029..1678862 (-)	834	WP_024010090.1	putative RNA methyltransferase	-
STAVA1121_RS08810 (STAVA1121_08695)	-	1679230..1679397 (+)	168	WP_164178320.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
STAVA1121_RS08815	-	1679450..1679713 (+)	264	WP_347131247.1	hypothetical protein	-
STAVA1121_RS08820 (STAVA1121_08700)	tadA	1679794..1680311 (-)	518	Protein_1679	tRNA adenosine(34) deaminase TadA	-
STAVA1121_RS08825 (STAVA1121_08705)	ssbA	1681071..1681463 (-)	393	WP_011226610.1	single-stranded DNA-binding protein	Machinery gene
STAVA1121_RS08830 (STAVA1121_08710)	-	1681668..1681895 (-)	228	WP_011226611.1	sulfurtransferase TusA family protein	-
STAVA1121_RS08835 (STAVA1121_08715)	-	1681897..1682940 (-)	1044	WP_347131248.1	YeeE/YedE family protein	-
STAVA1121_RS08840 (STAVA1121_08720)	ytpR	1683078..1683701 (-)	624	WP_082309147.1	YtpR family tRNA-binding protein	-
STAVA1121_RS08845 (STAVA1121_08725)	-	1683711..1684025 (-)	315	WP_002945230.1	thioredoxin family protein	-
STAVA1121_RS08850 (STAVA1121_08730)	-	1684022..1684306 (-)	285	WP_347131250.1	DUF4651 domain-containing protein	-
STAVA1121_RS08855 (STAVA1121_08735)	pepA	1684406..1685472 (+)	1067	Protein_1686	glutamyl aminopeptidase	-
STAVA1121_RS08860 (STAVA1121_08740)	proC	1685488..1686258 (+)	771	WP_011226616.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14773.70 Da
• Isoelectric Point: 5.9275

>NTDB_id=510685 STAVA1121_RS08825 WP_011226610.1 1681071..1681463(-) (ssbA) [Streptococcus thermophilus strain AVA1121]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGEIRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=510685 STAVA1121_RS08825 WP_011226610.1 1681071..1681463(-) (ssbA) [Streptococcus thermophilus strain AVA1121]
ATGTATAACAAAGTAATTTTAATTGGACGTTTGACAGCAACACCTGAAATGGTTAAGACTGCTAGTGACAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGATTTTATCACAGTAGTGGTTT
GGGGCCGTTTAGCTGAGACATTGGCATCTTATGCTAGCAAGGGAAGTTTAATTTCTCTTGATGGTGAGATTCGCACTCGT
AAGTATGATAAGGATGGTCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

3D structure

• AlphaFold DB: A0A3G6K2H6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	79.389	100	0.8
ssbB	Streptococcus sobrinus strain NIDR 6715-7	76.336	100	0.769
ssbB/cilA	Streptococcus pneumoniae TIGR4	74.809	100	0.754
ssbB/cilA	Streptococcus mitis SK321	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae R6	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae Rx1	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae D39	74.046	100	0.746
ssbB/cilA	Streptococcus mitis NCTC 12261	72.519	100	0.731
ssbB	Lactococcus lactis subsp. cremoris KW2	62.5	86.154	0.538
ssbA	Bacillus subtilis subsp. subtilis str. 168	47.17	81.538	0.385
ssb	Latilactobacillus sakei subsp. sakei 23K	46.226	81.538	0.377