Detailed information NTG0510443

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: STMM1_RS08750
• Genome accession: NZ_CP065484
• Coordinates: 1684876..1685268 (-)
• Length: 130 a.a.
• NCBI ID: WP_011227579.1
• Uniprot ID: A0A2S4DWC9
• Organism: Streptococcus thermophilus strain MM1
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1679876..1690268

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STMM1_RS08715 (STMM1_08655)	dapD	1680178..1680876 (-)	699	WP_002951996.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-
STMM1_RS08720 (STMM1_08660)	-	1680962..1681716 (-)	755	Protein_1661	HAD family hydrolase	-
STMM1_RS08725 (STMM1_08665)	-	1681831..1682664 (-)	834	WP_071417487.1	putative RNA methyltransferase	-
STMM1_RS08735 (STMM1_08675)	-	1683033..1683200 (+)	168	WP_071417488.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
STMM1_RS08740	-	1683253..1683516 (+)	264	WP_014608734.1	hypothetical protein	-
STMM1_RS08745 (STMM1_08680)	tadA	1683598..1684116 (-)	519	WP_014608735.1	tRNA adenosine(34) deaminase TadA	-
STMM1_RS08750 (STMM1_08685)	ssbA	1684876..1685268 (-)	393	WP_011227579.1	single-stranded DNA-binding protein	Machinery gene
STMM1_RS08755 (STMM1_08690)	-	1685473..1685700 (-)	228	WP_064355726.1	sulfurtransferase TusA family protein	-
STMM1_RS08760 (STMM1_08695)	-	1685715..1686746 (-)	1032	WP_071417489.1	YeeE/YedE family protein	-
STMM1_RS08765 (STMM1_08700)	ytpR	1686884..1687507 (-)	624	WP_071417490.1	YtpR family tRNA-binding protein	-
STMM1_RS08770 (STMM1_08705)	-	1687517..1687831 (-)	315	WP_002945230.1	thioredoxin family protein	-
STMM1_RS08775 (STMM1_08710)	-	1687828..1688112 (-)	285	WP_002952020.1	DUF4651 domain-containing protein	-
STMM1_RS08780 (STMM1_08715)	pepA	1688212..1689279 (+)	1068	WP_002952022.1	glutamyl aminopeptidase	-
STMM1_RS08785 (STMM1_08720)	proC	1689295..1690065 (+)	771	WP_011226616.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14773.70 Da
• Isoelectric Point: 5.9275

>NTDB_id=510443 STMM1_RS08750 WP_011227579.1 1684876..1685268(-) (ssbA) [Streptococcus thermophilus strain MM1]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGELRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=510443 STMM1_RS08750 WP_011227579.1 1684876..1685268(-) (ssbA) [Streptococcus thermophilus strain MM1]
ATGTATAACAAAGTAATTTTAATTGGACGTTTAACAGCTACTCCTGAAATGGTTAAGACTGCTAGCGATAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGACTTTATTACAGTGGTTGTCT
GGGGGCGTTTGGCTGAGACCTTAGCCTCTTATGCTAGCAAGGGGAGTTTAATTTCTCTTGATGGTGAGCTTCGTACCCGT
AAGTACGATAAGGATGGCCAAACCCATTACGTTACTGAGGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

3D structure

• AlphaFold DB: A0A2S4DWC9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	80.153	100	0.808
ssbB/cilA	Streptococcus pneumoniae TIGR4	75.573	100	0.762
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.762
ssbB/cilA	Streptococcus mitis SK321	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae R6	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae Rx1	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae D39	74.809	100	0.754
ssbB/cilA	Streptococcus mitis NCTC 12261	73.282	100	0.738
ssbB	Lactococcus lactis subsp. cremoris KW2	61.607	86.154	0.531
ssbA	Bacillus subtilis subsp. subtilis str. 168	48.113	81.538	0.392
ssb	Latilactobacillus sakei subsp. sakei 23K	47.17	81.538	0.385