Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I2439_RS09780 Genome accession   NZ_CP065191
Coordinates   2046396..2046791 (-) Length   131 a.a.
NCBI ID   WP_043053489.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ46     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2041396..2051791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2439_RS09760 (HIEAAJJG_01971) - 2042186..2042989 (-) 804 WP_111710882.1 ATP-binding cassette domain-containing protein -
  I2439_RS09765 (HIEAAJJG_01972) - 2042998..2043882 (-) 885 WP_043053486.1 ABC transporter permease -
  I2439_RS09770 (HIEAAJJG_01973) - 2043997..2044959 (-) 963 WP_196819704.1 ABC transporter substrate-binding protein -
  I2439_RS09775 (HIEAAJJG_01974) - 2044977..2045951 (-) 975 WP_043053488.1 ABC transporter substrate-binding protein -
  I2439_RS09780 (HIEAAJJG_01975) ssbA 2046396..2046791 (-) 396 WP_043053489.1 single-stranded DNA-binding protein Machinery gene
  I2439_RS09785 (HIEAAJJG_01976) - 2046902..2047615 (+) 714 WP_196819705.1 class I SAM-dependent methyltransferase -
  I2439_RS09790 (HIEAAJJG_01977) ytpR 2047917..2048543 (-) 627 WP_012516419.1 YtpR family tRNA-binding protein -
  I2439_RS09795 (HIEAAJJG_01978) - 2048558..2048875 (-) 318 WP_012516420.1 thioredoxin family protein -
  I2439_RS09800 (HIEAAJJG_01979) - 2048872..2049156 (-) 285 WP_269204251.1 DUF4651 domain-containing protein -
  I2439_RS09805 (HIEAAJJG_01980) pepA 2049560..2050627 (+) 1068 WP_196819706.1 glutamyl aminopeptidase -
  I2439_RS09810 (HIEAAJJG_01981) proC 2050716..2051489 (+) 774 WP_014623630.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14769.91 Da        Isoelectric Point: 8.0250

>NTDB_id=507853 I2439_RS09780 WP_043053489.1 2046396..2046791(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
MYNKVILIGRLVAKPELTKTLTDKQVVRFTLAVNRRFKTTTGEREVDFINVVAWGGLAETLASYASKGSLLSLDGELRTR
KYDKAGQTHFVTEVLCHSFQLLESRAQRAIRENNAANDLIDLALEEENLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=507853 I2439_RS09780 WP_043053489.1 2046396..2046791(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ46]
ATGTACAATAAAGTAATCTTGATAGGCCGTTTAGTGGCCAAGCCAGAATTAACCAAGACATTAACGGATAAGCAGGTCGT
TCGATTTACCTTAGCAGTTAATCGTCGGTTTAAGACGACGACTGGTGAGCGTGAGGTTGATTTTATCAATGTTGTTGCTT
GGGGAGGTTTGGCTGAAACCTTGGCTTCCTATGCTAGCAAGGGGAGCTTGCTGTCACTTGATGGCGAGCTTCGCACACGA
AAATATGACAAGGCAGGTCAGACTCATTTTGTGACAGAGGTTTTGTGTCATTCTTTTCAATTGCTGGAAAGTCGAGCGCA
ACGGGCCATACGTGAAAACAATGCTGCTAATGATTTGATTGATTTAGCCTTAGAGGAGGAAAATCTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

44.444

89.313

0.397