Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I2436_RS09120 Genome accession   NZ_CP065060
Coordinates   1939504..1939899 (-) Length   131 a.a.
NCBI ID   WP_012516417.1    Uniprot ID   A0A922T5M1
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1934504..1944899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2436_RS09100 (GDAKBCAL_01819) - 1934532..1935416 (-) 885 WP_043026732.1 ABC transporter permease -
  I2436_RS09105 (GDAKBCAL_01820) - 1935526..1936488 (-) 963 WP_012516415.1 ABC transporter substrate-binding protein -
  I2436_RS09110 (GDAKBCAL_01821) - 1936515..1937480 (-) 966 WP_041785774.1 ABC transporter substrate-binding protein -
  I2436_RS09115 (GDAKBCAL_01822) - 1937940..1939337 (+) 1398 WP_206152828.1 ISNCY-like element ISSeq2 family transposase -
  I2436_RS09120 (GDAKBCAL_01823) ssbA 1939504..1939899 (-) 396 WP_012516417.1 single-stranded DNA-binding protein Machinery gene
  I2436_RS09125 (GDAKBCAL_01824) ytpR 1940481..1941107 (-) 627 WP_012516419.1 YtpR family tRNA-binding protein -
  I2436_RS09130 (GDAKBCAL_01825) - 1941122..1941439 (-) 318 WP_012516420.1 thioredoxin family protein -
  I2436_RS09135 (GDAKBCAL_01826) - 1941436..1941720 (-) 285 WP_228274823.1 DUF4651 domain-containing protein -
  I2436_RS09140 (GDAKBCAL_01827) pepA 1942128..1943195 (+) 1068 WP_111692834.1 glutamyl aminopeptidase -
  I2436_RS09145 (GDAKBCAL_01828) proC 1943279..1944052 (+) 774 WP_043031581.1 pyrroline-5-carboxylate reductase -
  I2436_RS09150 (GDAKBCAL_01829) - 1944287..1944724 (-) 438 WP_012516424.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14783.98 Da        Isoelectric Point: 8.9315

>NTDB_id=506572 I2436_RS09120 WP_012516417.1 1939504..1939899(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
MYNKVILIGRLVAKPELTKTLTDKQVVRFTLAVNRRFKTTTGEREVDFINVVAWGGLAETLASYASKGSLLSLDGELRTR
KYDKAGQTHFVTEVLCHSFQLLESRAQRAIRENNAANDLIDLALEEEKLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=506572 I2436_RS09120 WP_012516417.1 1939504..1939899(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ28]
ATGTACAATAAAGTAATCTTGATAGGCCGTTTAGTGGCCAAGCCAGAATTAACCAAGACATTAACGGATAAGCAGGTCGT
TCGATTTACCTTAGCAGTTAATCGTCGGTTTAAGACGACGACTGGTGAGCGTGAGGTTGATTTTATCAATGTTGTTGCTT
GGGGAGGTTTGGCTGAAACCTTGGCTTCCTATGCTAGCAAGGGGAGCTTGCTGTCACTTGATGGCGAGCTTCGCACACGA
AAATATGACAAGGCAGGTCAGACTCATTTTGTGACAGAGGTTTTGTGTCATTCTTTTCAATTGCTGGAAAGTCGAGCGCA
ACGAGCTATACGTGAAAACAACGCTGCTAATGATTTGATTGATTTGGCTTTAGAGGAGGAAAAGCTTCCCTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

44.444

89.313

0.397