Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I2435_RS09560 Genome accession   NZ_CP065059
Coordinates   1995565..1995960 (-) Length   131 a.a.
NCBI ID   WP_014623622.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1990565..2000960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2435_RS09540 (JFMEOBDD_01924) - 1991352..1992155 (-) 804 WP_043983234.1 ATP-binding cassette domain-containing protein -
  I2435_RS09545 (JFMEOBDD_01925) - 1992164..1993048 (-) 885 WP_043026732.1 ABC transporter permease -
  I2435_RS09550 (JFMEOBDD_01926) - 1993163..1994125 (-) 963 WP_206156479.1 ABC transporter substrate-binding protein -
  I2435_RS09555 (JFMEOBDD_01927) - 1994152..1995117 (-) 966 WP_206156480.1 ABC transporter substrate-binding protein -
  I2435_RS09560 (JFMEOBDD_01928) ssbA 1995565..1995960 (-) 396 WP_014623622.1 single-stranded DNA-binding protein Machinery gene
  I2435_RS09565 (JFMEOBDD_01929) - 1996072..1996785 (+) 714 WP_206156481.1 class I SAM-dependent methyltransferase -
  I2435_RS09570 (JFMEOBDD_01930) ytpR 1997082..1997708 (-) 627 WP_043039515.1 YtpR family tRNA-binding protein -
  I2435_RS09575 (JFMEOBDD_01931) - 1997723..1998040 (-) 318 WP_206156482.1 thioredoxin family protein -
  I2435_RS09580 (JFMEOBDD_01932) - 1998037..1998321 (-) 285 WP_038674887.1 DUF4651 domain-containing protein -
  I2435_RS09585 (JFMEOBDD_01933) pepA 1998716..1999783 (+) 1068 WP_012678675.1 glutamyl aminopeptidase -
  I2435_RS09590 (JFMEOBDD_01934) proC 1999867..2000640 (+) 774 WP_165627098.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14754.85 Da        Isoelectric Point: 8.0250

>NTDB_id=506511 I2435_RS09560 WP_014623622.1 1995565..1995960(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ25]
MYNKVILIGRLVAKPELNKTLTDKQVVRFTLAVNRRFKTTTGEREVDFINAVAWGGLAETLASYASKGSLLSLDGELRTR
KYDKAGQTHFVTEVLCHSFQLLESRAQRAIRENNAANDLIDLALEEENLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=506511 I2435_RS09560 WP_014623622.1 1995565..1995960(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ25]
ATGTACAATAAAGTAATCTTGATAGGCCGTTTAGTGGCCAAGCCAGAATTAAACAAGACATTAACGGATAAGCAGGTCGT
TCGATTTACCTTAGCAGTTAATCGTCGGTTTAAGACGACGACTGGTGAGCGTGAGGTGGATTTTATCAATGCTGTTGCTT
GGGGAGGTTTGGCTGAAACCTTGGCTTCCTATGCTAGCAAGGGGAGTCTGCTGTCACTTGATGGCGAGCTTCGCACACGA
AAATATGACAAGGCGGGTCAGACTCATTTTGTGACAGAGGTTTTGTGTCATTCTTTTCAATTGCTGGAAAGTCGAGCGCA
ACGGGCCATACGTGAAAACAATGCTGCTAATGATTTGATTGATTTAGCCTTAGAGGAGGAAAATCTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

44.444

89.313

0.397