Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I2433_RS09890 Genome accession   NZ_CP065056
Coordinates   2047696..2048091 (-) Length   131 a.a.
NCBI ID   WP_111678712.1    Uniprot ID   A0AAX2LI80
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2042696..2053091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2433_RS09870 (JDBNIEOD_01986) - 2043481..2044284 (-) 804 WP_012678666.1 ATP-binding cassette domain-containing protein -
  I2433_RS09875 (JDBNIEOD_01987) - 2044293..2045177 (-) 885 WP_043026732.1 ABC transporter permease -
  I2433_RS09880 (JDBNIEOD_01988) - 2045289..2046251 (-) 963 WP_043041201.1 ABC transporter substrate-binding protein -
  I2433_RS09885 (JDBNIEOD_01989) - 2046278..2047243 (-) 966 WP_206152250.1 ABC transporter substrate-binding protein -
  I2433_RS09890 (JDBNIEOD_01990) ssbA 2047696..2048091 (-) 396 WP_111678712.1 single-stranded DNA-binding protein Machinery gene
  I2433_RS09895 (JDBNIEOD_01991) ytpR 2048679..2049305 (-) 627 WP_111678714.1 YtpR family tRNA-binding protein -
  I2433_RS09900 (JDBNIEOD_01992) - 2049320..2049637 (-) 318 WP_111678716.1 thioredoxin family protein -
  I2433_RS09905 (JDBNIEOD_01993) - 2049634..2049918 (-) 285 WP_037579431.1 DUF4651 domain-containing protein -
  I2433_RS09910 (JDBNIEOD_01994) pepA 2050323..2051390 (+) 1068 WP_111678718.1 glutamyl aminopeptidase -
  I2433_RS09915 (JDBNIEOD_01995) proC 2051474..2052247 (+) 774 WP_043031581.1 pyrroline-5-carboxylate reductase -
  I2433_RS09920 (JDBNIEOD_01996) - 2052483..2052920 (-) 438 WP_111678720.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14730.93 Da        Isoelectric Point: 7.8528

>NTDB_id=506392 I2433_RS09890 WP_111678712.1 2047696..2048091(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
MYNKVILIGRLVAKPELTKTLTDKQVVRFTLAVNRRFKTTTGECEVDFINVVAWGGLAETLASYASKGSLLSLDGELRTR
KYDKAGQTHFVTEVLCHSFQLLESRAQRAIRENNAANDLIDLALEEEKLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=506392 I2433_RS09890 WP_111678712.1 2047696..2048091(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain SEZ14]
ATGTACAATAAAGTAATCTTGATAGGCCGTTTAGTGGCCAAGCCAGAATTAACCAAGACATTAACTGATAAGCAGGTCGT
TCGATTTACCTTAGCAGTTAATCGTCGGTTTAAGACGACGACTGGTGAGTGTGAGGTTGATTTTATCAATGTTGTTGCTT
GGGGAGGCTTGGCTGAAACCTTGGCTTCCTATGCTAGCAAGGGAAGCCTGCTGTCACTTGATGGCGAGCTTCGCACACGA
AAATATGACAAGGCAGGTCAGACTCATTTTGTGACAGAGGTTTTGTGTCATTCTTTTCAATTGCTGGAAAGTCGAGCGCA
ACGAGCTATACGTGAAAACAACGCTGCTAATGATTTGATTGATTTGGCTTTAGAGGAGGAAAAGCTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae Rx1

69.466

100

0.695
  ssbB/cilA Streptococcus pneumoniae D39

69.466

100

0.695
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB/cilA Streptococcus mitis NCTC 12261

68.702

100

0.687
  ssbB Lactococcus lactis subsp. cremoris KW2

58.929

85.496

0.504
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

43.59

89.313

0.389