Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IPQ37_RS14550 Genome accession   NZ_CP065041
Coordinates   3145090..3146184 (-) Length   364 a.a.
NCBI ID   WP_237041203.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain AS-16-0963-3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3140090..3151184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPQ37_RS14520 (IPQ37_14510) hemF 3140604..3141515 (-) 912 WP_106142311.1 oxygen-dependent coproporphyrinogen oxidase -
  IPQ37_RS14525 (IPQ37_14515) - 3141519..3142076 (-) 558 WP_044178827.1 L-threonylcarbamoyladenylate synthase -
  IPQ37_RS14530 (IPQ37_14520) purE 3142269..3142754 (+) 486 WP_005302138.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  IPQ37_RS14535 (IPQ37_14525) - 3142757..3143878 (+) 1122 WP_237041201.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  IPQ37_RS14540 (IPQ37_14530) - 3143946..3144503 (-) 558 WP_237041202.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  IPQ37_RS14545 (IPQ37_14535) - 3144614..3145087 (-) 474 WP_036764597.1 DUF494 family protein -
  IPQ37_RS14550 (IPQ37_14540) dprA 3145090..3146184 (-) 1095 WP_237041203.1 DNA-processing protein DprA Machinery gene
  IPQ37_RS14555 (IPQ37_14545) - 3146187..3147245 (-) 1059 WP_115426095.1 LysM peptidoglycan-binding domain-containing protein -
  IPQ37_RS14560 (IPQ37_14550) def 3147534..3148046 (+) 513 WP_068945797.1 peptide deformylase -
  IPQ37_RS14565 (IPQ37_14555) fmt 3148059..3149003 (+) 945 WP_237041205.1 methionyl-tRNA formyltransferase -
  IPQ37_RS14570 (IPQ37_14560) rsmB 3149142..3150419 (+) 1278 WP_237042525.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39174.20 Da        Isoelectric Point: 6.3648

>NTDB_id=506156 IPQ37_RS14550 WP_237041203.1 3145090..3146184(-) (dprA) [Photobacterium damselae subsp. damselae strain AS-16-0963-3]
MDDIHAWLKLVAVPGLGGHRISRLLQHAMPEQIMAMDESELRSIGLTLKQVAAIKHPDNKKIDLALNWQQRPHCHIIPLV
SPLYPPLLKEISSAPPLLFVKGDPSFLAQPQIAIIGSRSASIDGREIAADFAANIVAQNYVVTSGLALGIDSQAHQGALR
HGGATIAVLGSGLEQIYPACHKSLAASIVEQGALVSEFWPQEKPRAQFFPRRNRIISGLSVGVLVVEAAQKSGSLITANY
ALEQGREVFAIPGSIYNPASRGCNALIKSGAKLVESAHDIFEEVGALTECAINHQLSQALPETENEQLPFPELLATVGSE
VIPVDVLAERSQMPVHDVMTQLLELELLGLVTALPGGYIRTRRG

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=506156 IPQ37_RS14550 WP_237041203.1 3145090..3146184(-) (dprA) [Photobacterium damselae subsp. damselae strain AS-16-0963-3]
ATGGACGATATCCATGCTTGGCTGAAATTGGTGGCTGTTCCTGGACTCGGTGGCCACCGTATCAGTCGTTTATTACAACA
TGCAATGCCAGAGCAAATTATGGCAATGGATGAGTCTGAACTGCGAAGTATCGGGTTGACGCTAAAGCAGGTTGCCGCCA
TTAAGCATCCCGACAATAAGAAAATAGATTTGGCGCTAAATTGGCAGCAGCGTCCCCATTGTCACATTATTCCTTTAGTT
TCGCCCTTGTATCCACCTTTATTAAAGGAGATCAGCTCAGCACCTCCTTTGTTATTTGTTAAAGGTGATCCTTCTTTCTT
AGCCCAGCCTCAAATTGCCATTATTGGTAGTCGCTCAGCCAGTATTGATGGTCGAGAAATTGCCGCTGACTTTGCTGCAA
ATATTGTGGCGCAAAATTATGTGGTAACCAGTGGCTTAGCCTTGGGCATCGATAGTCAAGCTCATCAAGGAGCCCTACGT
CATGGCGGGGCAACCATTGCCGTTTTAGGTTCCGGGCTGGAGCAGATTTATCCCGCATGTCACAAATCGTTAGCTGCAAG
TATTGTTGAGCAGGGTGCTCTTGTCTCTGAGTTTTGGCCGCAAGAAAAACCACGGGCCCAATTTTTTCCACGTAGAAACC
GGATTATTAGCGGTTTATCTGTTGGAGTATTGGTTGTGGAAGCGGCTCAAAAAAGTGGATCATTAATTACGGCTAATTAT
GCTTTAGAACAAGGCCGAGAGGTCTTTGCTATACCTGGTTCTATTTATAATCCCGCCAGCCGAGGTTGTAATGCATTGAT
AAAATCGGGTGCTAAACTTGTAGAAAGTGCTCACGATATTTTCGAGGAGGTAGGAGCCCTAACAGAATGCGCAATTAATC
ACCAATTAAGCCAAGCTCTACCCGAGACAGAAAATGAACAATTGCCATTTCCTGAACTGTTGGCTACCGTAGGCAGCGAA
GTGATACCAGTCGATGTCTTAGCTGAGCGCAGCCAAATGCCAGTTCATGATGTCATGACGCAATTATTAGAATTAGAATT
GCTCGGATTGGTCACCGCATTACCCGGTGGTTATATCAGAACGAGAAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(70-275)

DprA winged helix domain (DprA_WH)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

55.923

99.725

0.558
  dprA Vibrio cholerae strain A1552

51.451

100

0.536
  dprA Glaesserella parasuis strain SC1401

47.467

100

0.489
  dprA Legionella pneumophila strain ERS1305867

43.36

100

0.44
  dprA Haemophilus influenzae Rd KW20

46.334

93.681

0.434
  dprA Neisseria meningitidis strain C311

44.237

88.187

0.39
  dprA Neisseria meningitidis MC58

44.237

88.187

0.39
  dprA Acinetobacter baumannii strain A118

42.901

89.011

0.382
  dprA Neisseria gonorrhoeae MS11

43.26

87.637

0.379
  dprA Neisseria gonorrhoeae strain FA1090

42.633

87.637

0.374
  dprA Acinetobacter baylyi ADP1

45.27

81.319

0.368