Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IXK98_RS10855 Genome accession   NZ_CP064858
Coordinates   456538..457761 (-) Length   407 a.a.
NCBI ID   WP_171801082.1    Uniprot ID   A0AAE7ASC9
Organism   Vibrio europaeus strain 07/118 T2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 451538..462761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXK98_RS10815 (IXK98_10815) rpsP 451654..451902 (+) 249 WP_004742593.1 30S ribosomal protein S16 -
  IXK98_RS10820 (IXK98_10820) rimM 451932..452480 (+) 549 WP_069667597.1 ribosome maturation factor RimM -
  IXK98_RS10825 (IXK98_10825) trmD 452508..453251 (+) 744 WP_171801080.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  IXK98_RS10830 (IXK98_10830) rplS 453293..453646 (+) 354 WP_004742596.1 50S ribosomal protein L19 -
  IXK98_RS10835 (IXK98_10835) yacG 453969..454163 (-) 195 WP_069667595.1 DNA gyrase inhibitor YacG -
  IXK98_RS10840 (IXK98_10840) zapD 454226..454966 (-) 741 WP_004742598.1 cell division protein ZapD -
  IXK98_RS10845 (IXK98_10845) coaE 455001..455609 (-) 609 WP_069667594.1 dephospho-CoA kinase -
  IXK98_RS10850 (IXK98_10850) pilD 455611..456480 (-) 870 WP_171801081.1 prepilin peptidase Machinery gene
  IXK98_RS10855 (IXK98_10855) pilC 456538..457761 (-) 1224 WP_171801082.1 type II secretion system F family protein Machinery gene
  IXK98_RS10860 (IXK98_10860) pilB 457772..459463 (-) 1692 WP_171801083.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IXK98_RS10865 (IXK98_10865) pilA 459469..459903 (-) 435 WP_069667590.1 type IV pilin protein Machinery gene
  IXK98_RS10870 (IXK98_10870) nadC 460146..461033 (-) 888 WP_195877354.1 carboxylating nicotinate-nucleotide diphosphorylase -
  IXK98_RS10875 (IXK98_10875) ampD 461165..461719 (+) 555 WP_171801084.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  IXK98_RS10880 (IXK98_10880) fldB 461957..462478 (-) 522 WP_171801085.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44912.19 Da        Isoelectric Point: 10.3713

>NTDB_id=505381 IXK98_RS10855 WP_171801082.1 456538..457761(-) (pilC) [Vibrio europaeus strain 07/118 T2]
MKATSHQLKQYRWKGVNQRGKLVSGSTLALSDNEVKGKLSEQSIRVKSLRRKSLSLVTRLTQRVKKKDITLLTRQLSTML
ATGVPLIQALKLITLNHPKAEMRSILSYISKEVESGNPLSQSLGTASPLFDSLYTDLVATGEQSGNLAEVLQRIADYREK
SQRLNAKVTKALIYPTMVMTTAFAVTYLMLTMVIPQFEAMFAGFGAELPWLTQQVLALSAWLQTYSGASLIGLMLMLGVI
KLGLTKSYRLQLLFSRALLKIPLLGNILTKAAIAKFSRTLATSFNAGIPILEGIRASAKTVRNQHYHQAIKTAMLDVTAG
MPLYLSLRNSDCFPEMVLQMIMIGEESGRLGEMLHKIADVYEFEIDNTVDNLGKIIEPAIIIFLGIVVGGLIVAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=505381 IXK98_RS10855 WP_171801082.1 456538..457761(-) (pilC) [Vibrio europaeus strain 07/118 T2]
ATGAAAGCAACATCTCATCAGCTCAAACAGTATCGCTGGAAGGGGGTTAACCAGCGAGGAAAGCTCGTTTCTGGCTCTAC
GCTCGCCTTAAGTGACAACGAAGTAAAAGGTAAGCTGAGTGAACAATCGATCCGTGTTAAATCTCTAAGAAGAAAGTCAC
TGTCTCTCGTTACTCGCCTAACACAAAGAGTCAAAAAGAAAGACATCACTCTACTCACGAGGCAGCTGAGCACTATGCTC
GCGACTGGAGTGCCACTGATTCAAGCATTGAAGCTTATTACTCTTAACCACCCCAAAGCTGAGATGAGATCGATCTTAAG
CTACATAAGCAAGGAGGTAGAATCAGGAAACCCGCTATCTCAGAGCTTAGGCACCGCTAGCCCACTATTCGATAGCCTTT
ATACCGACCTCGTTGCCACTGGAGAGCAGTCTGGCAACTTAGCGGAAGTACTCCAACGTATTGCTGACTATCGGGAAAAA
TCGCAACGACTTAACGCCAAGGTAACCAAAGCGCTCATCTATCCCACTATGGTGATGACCACGGCTTTCGCAGTTACCTA
TCTCATGCTAACAATGGTGATACCTCAATTTGAAGCGATGTTTGCAGGCTTTGGTGCTGAGCTTCCTTGGCTTACCCAAC
AAGTGCTGGCCTTATCCGCTTGGCTACAAACCTATTCGGGAGCTAGCTTAATTGGTTTGATGCTGATGTTAGGGGTCATT
AAGCTCGGTTTAACAAAATCATACCGACTTCAATTACTGTTTAGTCGTGCCCTACTCAAGATCCCGCTTCTCGGCAACAT
CTTGACTAAAGCGGCAATTGCTAAATTTAGCCGAACACTTGCCACTAGCTTTAACGCCGGAATCCCAATTCTAGAAGGTA
TAAGAGCCTCCGCTAAAACGGTTCGTAACCAGCATTATCATCAAGCAATCAAAACGGCTATGCTTGATGTCACTGCAGGT
ATGCCGCTGTATCTTTCACTGCGCAACTCTGACTGTTTTCCCGAAATGGTTTTGCAGATGATAATGATAGGTGAAGAGTC
AGGACGACTCGGAGAAATGCTACACAAAATTGCCGATGTATATGAATTTGAAATCGATAACACGGTTGATAACCTTGGTA
AGATCATAGAGCCCGCGATTATCATCTTTCTAGGTATTGTTGTCGGTGGTCTGATTGTCGCAATGTATTTACCTATCTTT
AATTTGATGAGTGTCTTAGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(73-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

62.5

100

0.627
  pilC Vibrio campbellii strain DS40M4

59.024

100

0.595
  pilC Pseudomonas stutzeri DSM 10701

41.414

97.297

0.403
  pilC Acinetobacter baylyi ADP1

39.454

99.017

0.391
  pilC Legionella pneumophila strain ERS1305867

38.142

100

0.383
  pilC Acinetobacter baumannii D1279779

37.717

99.017

0.373
  pilG Neisseria gonorrhoeae MS11

39.276

95.086

0.373
  pilG Neisseria meningitidis 44/76-A

39.018

95.086

0.371