Detailed information NTG0505380

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IXK98_RS10850
• Genome accession: NZ_CP064858
• Coordinates: 455611..456480 (-)
• Length: 289 a.a.
• NCBI ID: WP_171801081.1
• Uniprot ID: A0AAE7AUJ3
• Organism: Vibrio europaeus strain 07/118 T2
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 450611..461480

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IXK98_RS10815 (IXK98_10815)	rpsP	451654..451902 (+)	249	WP_004742593.1	30S ribosomal protein S16	-
IXK98_RS10820 (IXK98_10820)	rimM	451932..452480 (+)	549	WP_069667597.1	ribosome maturation factor RimM	-
IXK98_RS10825 (IXK98_10825)	trmD	452508..453251 (+)	744	WP_171801080.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
IXK98_RS10830 (IXK98_10830)	rplS	453293..453646 (+)	354	WP_004742596.1	50S ribosomal protein L19	-
IXK98_RS10835 (IXK98_10835)	yacG	453969..454163 (-)	195	WP_069667595.1	DNA gyrase inhibitor YacG	-
IXK98_RS10840 (IXK98_10840)	zapD	454226..454966 (-)	741	WP_004742598.1	cell division protein ZapD	-
IXK98_RS10845 (IXK98_10845)	coaE	455001..455609 (-)	609	WP_069667594.1	dephospho-CoA kinase	-
IXK98_RS10850 (IXK98_10850)	pilD	455611..456480 (-)	870	WP_171801081.1	prepilin peptidase	Machinery gene
IXK98_RS10855 (IXK98_10855)	pilC	456538..457761 (-)	1224	WP_171801082.1	type II secretion system F family protein	Machinery gene
IXK98_RS10860 (IXK98_10860)	pilB	457772..459463 (-)	1692	WP_171801083.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IXK98_RS10865 (IXK98_10865)	pilA	459469..459903 (-)	435	WP_069667590.1	type IV pilin protein	Machinery gene
IXK98_RS10870 (IXK98_10870)	nadC	460146..461033 (-)	888	WP_195877354.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32240.28 Da
• Isoelectric Point: 4.7490

>NTDB_id=505380 IXK98_RS10850 WP_171801081.1 455611..456480(-) (pilD) [Vibrio europaeus strain 07/118 T2]
MDVFDYYPWLFPTLATLFGLIVGSFLNVVIHRLPIIMEREWRAECAESFPEYQISPPEGTYNLSVPNSTCPKCDTPIRII
DNIPVVSWLILKGKCRQCDNKISMRYPLIEVLSAGLCFVIANQFALSYFSIALLFFTFTLIAATFIDLDTMLLPDQLTLP
LTWAGIALALFGISPVSLQDAVIGAMAGYLALWSVYWLFKLATGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSLVGL
IFGLIQLKLKSQGIDKAFPFGPYLAIAGWLSMMLGNDILNWYLSNFLGI

Nucleotide

• Length: 870 bp

>NTDB_id=505380 IXK98_RS10850 WP_171801081.1 455611..456480(-) (pilD) [Vibrio europaeus strain 07/118 T2]
ATGGACGTTTTTGACTATTACCCTTGGCTTTTTCCTACACTAGCAACATTGTTTGGTCTTATCGTAGGCAGCTTTTTAAA
CGTGGTTATCCATCGCCTGCCGATCATCATGGAACGTGAATGGCGAGCCGAATGTGCGGAAAGCTTTCCCGAATACCAGA
TATCGCCTCCAGAAGGGACCTATAACCTCAGCGTTCCAAATTCAACTTGCCCTAAATGTGATACTCCCATTCGCATAATT
GATAACATTCCCGTTGTTAGTTGGCTGATATTGAAAGGAAAATGTCGTCAATGCGATAATAAAATAAGCATGCGCTACCC
TCTGATTGAGGTCCTATCAGCAGGCTTATGTTTTGTTATCGCTAATCAGTTTGCATTGAGCTACTTCTCGATTGCCTTGC
TGTTTTTCACCTTTACTCTTATCGCGGCGACCTTTATTGATCTCGACACCATGCTGCTGCCAGATCAACTCACTCTTCCT
TTAACATGGGCAGGAATTGCGCTCGCACTGTTTGGGATTAGCCCAGTGTCTCTGCAAGATGCGGTGATCGGTGCAATGGC
TGGCTATCTTGCTTTATGGTCAGTTTACTGGCTGTTTAAGCTAGCCACAGGCAAAGAAGGGATGGGTTACGGAGACTTTA
AACTGCTTGCCGCCTTAGGCGCTTGGCTTGGTTGGCAGTATTTGCCGATGATCATTTTGCTCTCTTCTTTAGTTGGCTTA
ATTTTTGGCCTCATACAGCTCAAATTGAAAAGCCAAGGAATCGACAAAGCCTTCCCATTTGGCCCTTATTTAGCTATTGC
AGGCTGGTTGAGTATGATGTTGGGAAATGACATTCTCAATTGGTATTTAAGCAACTTTTTAGGAATCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.74	100	0.747
pilD	Vibrio cholerae strain A1552	71.528	99.654	0.713
pilD	Acinetobacter baumannii D1279779	49.259	93.426	0.46
pilD	Acinetobacter nosocomialis M2	49.077	93.772	0.46
pilD	Neisseria gonorrhoeae MS11	47.273	95.156	0.45