Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IU367_RS19660 Genome accession   NZ_CP064746
Coordinates   4242840..4244081 (+) Length   413 a.a.
NCBI ID   WP_098981882.1    Uniprot ID   -
Organism   Aeromonas bestiarum strain YK48     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4237840..4249081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IU367_RS19635 (IU367_19520) ampD 4238184..4238756 (-) 573 WP_043554347.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  IU367_RS19640 (IU367_19525) - 4238905..4239375 (+) 471 WP_181003660.1 retropepsin-like aspartic protease family protein -
  IU367_RS19645 (IU367_19530) nadC 4239381..4240238 (+) 858 WP_274452884.1 carboxylating nicotinate-nucleotide diphosphorylase -
  IU367_RS19650 (IU367_19535) - 4240561..4241001 (+) 441 WP_274452886.1 pilin -
  IU367_RS19655 (IU367_19540) pilB 4240992..4242707 (+) 1716 WP_274454404.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  IU367_RS19660 (IU367_19545) pilC 4242840..4244081 (+) 1242 WP_098981882.1 type II secretion system F family protein Machinery gene
  IU367_RS19665 (IU367_19550) pilD 4244144..4245016 (+) 873 WP_274452887.1 type IVa prepilin peptidase/methyltransferase TapD Machinery gene
  IU367_RS19670 (IU367_19555) coaE 4245035..4245649 (+) 615 WP_103472090.1 dephospho-CoA kinase -
  IU367_RS19675 (IU367_19560) zapD 4245687..4246409 (+) 723 WP_043139926.1 cell division protein ZapD -
  IU367_RS19680 (IU367_19565) yacG 4246419..4246613 (+) 195 WP_042039030.1 DNA gyrase inhibitor YacG -
  IU367_RS19685 (IU367_19570) mutT 4246687..4247094 (-) 408 WP_241279560.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45371.49 Da        Isoelectric Point: 9.8637

>NTDB_id=504513 IU367_RS19660 WP_098981882.1 4242840..4244081(+) (pilC) [Aeromonas bestiarum strain YK48]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPRHFDALYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPAMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQHWWYVIFGGTA
FAIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=504513 IU367_RS19660 WP_098981882.1 4242840..4244081(+) (pilC) [Aeromonas bestiarum strain YK48]
ATGGCAACGCTAACGCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGAGCGGAGTAAACCGCAAGGGTCA
GAAGGTCTCCGGTGAATTGCAGGCCGACAGTATCAACACGGTCAAGGCTGAACTGCGCAAGCAGGGCGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGTTATTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGATATTGCCATCGTCTCCCGT
CAAATCACCACCATGCTCTCCGCTGGCGTCCCCCTGGTACAGAGCCTGCAGATCATAGCCCGCAGCCACGAAAAAGCCTC
GATGCGTGAGCTCATGGGGCAGATCGCCGCCGACGTGGAAACCGGCACCCCCATGTCCGAGGCGCTGCGCCGCCATCCCC
GCCACTTTGATGCGCTCTATTGTGATCTGGTTGAGGCGGGGGAGCAATCCGGTGCGCTGGAGACCATCTATGACCGCATC
GCCACCTATCGGGAAAAGTCGGAAGCGCTCAAGTCCAAGATCAAGAAGGCGATGTTCTATCCGGCCATGGTCATCCTGGT
CGCCATCGTCGTCACCTCCATACTGCTGCTGTTCGTCATCCCGCAGTTTGAGGACATCTTCAAGAGCTTCGGCGCCGAGC
TGCCCATCTTCACCCAGTTTGTCATCGGCATCTCCCGCTTCATGCAGCATTGGTGGTATGTCATCTTTGGCGGCACAGCG
TTCGCCATTTTCCTCTATGTACGGGCATGGCGCGCGTCCCAGAAGGTCAAAGACAATACCGACAAGTTCATCCTCACCAT
ACCCGTGGTCGGCATGATACTGCACAAGGCAGCCATGGCACGCTTCGCCCGCACCCTCTCCACCACCTTCTCGGCGGGCA
TCCCACTGGTTGATGCACTGATCTCGGCCGCCGGCGCTTCAGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTCGCCGGCATGCAGATCAACGTGGCCATGCGCACAGTGGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCGACCATCTTCGAACAAGAGGTTGATGACT
TGGTCGACGGCCTCACCAGCTTGCTCGAGCCCCTCATCATGGTAGTGCTGGGGGTACTGGTTGGTGGCATGGTCGTGGCC
ATGTACTTGCCCATCTTCAAGCTGGGAGACGTAGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.071

95.884

0.547
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Acinetobacter baylyi ADP1

52.141

96.126

0.501
  pilC Legionella pneumophila strain ERS1305867

51.111

98.063

0.501
  pilC Vibrio cholerae strain A1552

47.87

96.61

0.462
  pilC Vibrio campbellii strain DS40M4

46.287

97.821

0.453
  pilG Neisseria gonorrhoeae MS11

40.741

98.063

0.4
  pilG Neisseria meningitidis 44/76-A

40.494

98.063

0.397
  pilC Thermus thermophilus HB27

38

96.852

0.368