Detailed information NTG0504514

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IU367_RS19665
• Genome accession: NZ_CP064746
• Coordinates: 4244144..4245016 (+)
• Length: 290 a.a.
• NCBI ID: WP_274452887.1
• Uniprot ID: -
• Organism: Aeromonas bestiarum strain YK48
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4239144..4250016

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IU367_RS19645 (IU367_19530)	nadC	4239381..4240238 (+)	858	WP_274452884.1	carboxylating nicotinate-nucleotide diphosphorylase	-
IU367_RS19650 (IU367_19535)	-	4240561..4241001 (+)	441	WP_274452886.1	pilin	-
IU367_RS19655 (IU367_19540)	pilB	4240992..4242707 (+)	1716	WP_274454404.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
IU367_RS19660 (IU367_19545)	pilC	4242840..4244081 (+)	1242	WP_098981882.1	type II secretion system F family protein	Machinery gene
IU367_RS19665 (IU367_19550)	pilD	4244144..4245016 (+)	873	WP_274452887.1	type IVa prepilin peptidase/methyltransferase TapD	Machinery gene
IU367_RS19670 (IU367_19555)	coaE	4245035..4245649 (+)	615	WP_103472090.1	dephospho-CoA kinase	-
IU367_RS19675 (IU367_19560)	zapD	4245687..4246409 (+)	723	WP_043139926.1	cell division protein ZapD	-
IU367_RS19680 (IU367_19565)	yacG	4246419..4246613 (+)	195	WP_042039030.1	DNA gyrase inhibitor YacG	-
IU367_RS19685 (IU367_19570)	mutT	4246687..4247094 (-)	408	WP_241279560.1	8-oxo-dGTP diphosphatase MutT	-
IU367_RS19690 (IU367_19575)	secA	4247186..4249906 (-)	2721	WP_043139934.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32257.54 Da
• Isoelectric Point: 6.4784

>NTDB_id=504514 IU367_RS19665 WP_274452887.1 4244144..4245016(+) (pilD) [Aeromonas bestiarum strain YK48]
MTLLLELAHGLPWLYLSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFNPDDEGVDEPPYNLMVPRSCCPHCNHP
ITALENIPLLSWLWLRGRCRGCQAPISARYPLVELLTALLSVAVAMTLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLLGGFVSLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGALMGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=504514 IU367_RS19665 WP_274452887.1 4244144..4245016(+) (pilD) [Aeromonas bestiarum strain YK48]
ATGACACTTCTCCTCGAGCTGGCACACGGCTTGCCCTGGCTCTATCTCTCGCTGGTATTTCTCTTTTCCCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATATCGCAGCTACTTCA
ACCCTGATGACGAGGGGGTCGACGAGCCGCCCTACAACCTGATGGTGCCGCGATCCTGCTGCCCCCACTGCAATCACCCC
ATCACGGCACTGGAAAATATCCCCCTGCTGAGCTGGCTCTGGCTCAGGGGTCGCTGCCGAGGCTGCCAGGCTCCCATATC
GGCCCGCTATCCACTGGTCGAGCTGCTGACCGCGCTGCTCTCGGTAGCCGTTGCCATGACACTCGCACCGGGCTGGGGCA
CGTTGGCGGCCCTGCTGCTGACCTGGGTACTGGTGGCACTCACCTTCATCGATCTCGACAAGATGCTGCTGCCGGACCAG
CTCACCCTGCCCCTGCTGTGGGGCGGGCTGCTGTTCAATTTGCTGGGCGGTTTTGTGTCGCTTGGCGATGCGGTGATCGG
CGCAATGGCCGGTTATCTGGTGCTATGGAGCCTCTATTGGGCCTTCAAGCTGCTCACCGGCAAGGAGGGCATGGGCTATG
GTGACTTCAAGCTGCTGGCCGCGCTGGGTGCCTGGCTGGGCTGGCAGGCGCTGCCCATAGTGCTGCTGCTCTCCTCCCTG
GTCGGCGCCCTCATGGGCATAGGCCTGATCCTGCTGCGCAATCACCATCAGAGCAAACCCATTCCCTTTGGCCCCTATCT
CGCCATCGCCGGCTGGATTGCACTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTCACGACTTTCCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.672	98.966	0.61
pilD	Vibrio campbellii strain DS40M4	56.207	100	0.562
pilD	Acinetobacter nosocomialis M2	54.676	95.862	0.524
pilD	Acinetobacter baumannii D1279779	54.317	95.862	0.521
pilD	Neisseria gonorrhoeae MS11	51.087	95.172	0.486