Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IUJ40_RS08905 Genome accession   NZ_CP064389
Coordinates   1756598..1757023 (-) Length   141 a.a.
NCBI ID   WP_000934384.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PartE-Saureus-RM8376     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1721430..1765440 1756598..1757023 within 0


Gene organization within MGE regions


Location: 1721430..1765440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ40_RS08645 (IUJ40_08650) - 1721430..1721813 (-) 384 WP_001251276.1 hypothetical protein -
  IUJ40_RS08650 (IUJ40_08655) - 1721800..1722111 (-) 312 WP_000344116.1 DUF3467 domain-containing protein -
  IUJ40_RS08655 (IUJ40_08660) - 1722777..1724222 (-) 1446 WP_001148136.1 SH3 domain-containing protein -
  IUJ40_RS08660 (IUJ40_08665) - 1724203..1724640 (-) 438 WP_000354132.1 phage holin -
  IUJ40_RS08665 (IUJ40_08670) - 1724696..1725091 (-) 396 WP_000398873.1 hypothetical protein -
  IUJ40_RS08670 (IUJ40_08675) - 1725096..1726334 (-) 1239 WP_023487053.1 BppU family phage baseplate upper protein -
  IUJ40_RS08675 (IUJ40_08680) - 1726347..1728221 (-) 1875 WP_023487054.1 glucosaminidase domain-containing protein -
  IUJ40_RS08680 (IUJ40_08685) - 1728358..1728657 (-) 300 WP_023487055.1 DUF2951 domain-containing protein -
  IUJ40_RS08685 (IUJ40_08690) - 1728698..1728871 (-) 174 WP_001790193.1 XkdX family protein -
  IUJ40_RS08690 (IUJ40_08695) - 1728875..1729252 (-) 378 WP_000705893.1 DUF2977 domain-containing protein -
  IUJ40_RS08695 (IUJ40_08700) - 1729252..1731075 (-) 1824 WP_023487056.1 phage baseplate upper protein -
  IUJ40_RS08700 (IUJ40_08705) - 1731075..1732973 (-) 1899 WP_023487057.1 hypothetical protein -
  IUJ40_RS08705 (IUJ40_08710) - 1732986..1734872 (-) 1887 WP_015984523.1 SGNH/GDSL hydrolase family protein -
  IUJ40_RS08710 (IUJ40_08715) - 1734883..1735824 (-) 942 WP_140045513.1 phage tail domain-containing protein -
  IUJ40_RS08715 (IUJ40_08720) - 1735839..1738724 (-) 2886 WP_023487058.1 phage tape measure protein -
  IUJ40_RS08720 (IUJ40_08725) - 1738728..1739012 (-) 285 WP_000880587.1 hypothetical protein -
  IUJ40_RS08725 (IUJ40_08730) - 1739057..1739563 (-) 507 WP_000134337.1 tail assembly chaperone -
  IUJ40_RS08730 (IUJ40_08735) - 1739630..1740187 (-) 558 WP_000057582.1 tail protein -
  IUJ40_RS08735 (IUJ40_08740) - 1740188..1740613 (-) 426 WP_000270190.1 DUF3168 domain-containing protein -
  IUJ40_RS08740 (IUJ40_08745) - 1740626..1741033 (-) 408 WP_001151323.1 HK97-gp10 family putative phage morphogenesis protein -
  IUJ40_RS08745 (IUJ40_08750) - 1741020..1741355 (-) 336 WP_000483041.1 phage head closure protein -
  IUJ40_RS08750 (IUJ40_08755) - 1741367..1741717 (-) 351 WP_023487059.1 head completion protein -
  IUJ40_RS08755 (IUJ40_08760) - 1741723..1741866 (-) 144 WP_000002931.1 hypothetical protein -
  IUJ40_RS08760 (IUJ40_08765) - 1741878..1742792 (-) 915 WP_000235168.1 phage major capsid protein -
  IUJ40_RS08765 (IUJ40_08770) - 1742809..1743393 (-) 585 WP_001019224.1 DUF4355 domain-containing protein -
  IUJ40_RS08770 (IUJ40_08775) - 1743496..1743696 (-) 201 WP_033841232.1 hypothetical protein -
  IUJ40_RS08775 (IUJ40_08780) - 1743698..1744651 (-) 954 WP_000184130.1 phage head morphogenesis protein -
  IUJ40_RS08780 (IUJ40_08785) - 1744620..1746044 (-) 1425 WP_023487061.1 phage portal protein -
  IUJ40_RS08785 (IUJ40_08790) - 1746041..1747264 (-) 1224 WP_001037577.1 PBSX family phage terminase large subunit -
  IUJ40_RS08790 (IUJ40_08795) - 1747257..1747751 (-) 495 WP_000594088.1 terminase small subunit -
  IUJ40_RS08795 (IUJ40_08800) - 1748104..1748505 (-) 402 WP_000286968.1 hypothetical protein -
  IUJ40_RS08800 (IUJ40_08805) rinB 1748506..1748679 (-) 174 WP_047216536.1 transcriptional activator RinB -
  IUJ40_RS08805 (IUJ40_08810) - 1748672..1748908 (-) 237 WP_000483477.1 hypothetical protein -
  IUJ40_RS08810 (IUJ40_08815) - 1748933..1749169 (-) 237 WP_000195761.1 DUF1381 domain-containing protein -
  IUJ40_RS08815 (IUJ40_08820) - 1749186..1749359 (-) 174 WP_001209216.1 hypothetical protein -
  IUJ40_RS08820 (IUJ40_08825) - 1749396..1749932 (-) 537 WP_023487063.1 dUTPase -
  IUJ40_RS08825 (IUJ40_08830) - 1749925..1750095 (-) 171 WP_001614817.1 hypothetical protein -
  IUJ40_RS08830 (IUJ40_08835) - 1750082..1750336 (-) 255 WP_001614814.1 DUF1024 family protein -
  IUJ40_RS08835 (IUJ40_08840) - 1750329..1750637 (-) 309 WP_000144710.1 hypothetical protein -
  IUJ40_RS08840 (IUJ40_08845) - 1750634..1750981 (-) 348 WP_000979209.1 YopX family protein -
  IUJ40_RS08845 (IUJ40_08850) - 1750978..1751379 (-) 402 WP_000695762.1 hypothetical protein -
  IUJ40_RS08850 (IUJ40_08855) - 1751392..1751640 (-) 249 WP_012068339.1 SAV1978 family virulence-associated passenger protein -
  IUJ40_RS08855 (IUJ40_08860) - 1751640..1751894 (-) 255 WP_000022735.1 DUF3310 domain-containing protein -
  IUJ40_RS08860 (IUJ40_08870) - 1751980..1752165 (-) 186 WP_001187230.1 DUF3113 family protein -
  IUJ40_RS08865 (IUJ40_08875) - 1752165..1752572 (-) 408 WP_020808008.1 RusA family crossover junction endodeoxyribonuclease -
  IUJ40_RS08870 (IUJ40_08880) - 1752582..1752803 (-) 222 WP_001123684.1 DUF3269 family protein -
  IUJ40_RS08875 (IUJ40_08885) - 1752807..1753022 (-) 216 WP_001024405.1 hypothetical protein -
  IUJ40_RS08880 (IUJ40_08890) - 1753019..1754260 (-) 1242 WP_023180135.1 DnaB helicase C-terminal domain-containing protein -
  IUJ40_RS08885 (IUJ40_08895) - 1754257..1754613 (-) 357 WP_001132243.1 hypothetical protein -
  IUJ40_RS08890 (IUJ40_08900) - 1754613..1755368 (-) 756 WP_001037657.1 DnaD domain protein -
  IUJ40_RS08895 (IUJ40_08905) - 1755361..1756035 (-) 675 WP_015445893.1 putative HNHc nuclease -
  IUJ40_RS08900 (IUJ40_08910) - 1756036..1756587 (-) 552 WP_001004506.1 NUMOD4 domain-containing protein -
  IUJ40_RS08905 (IUJ40_08915) ssbA 1756598..1757023 (-) 426 WP_000934384.1 single-stranded DNA-binding protein Machinery gene
  IUJ40_RS08910 (IUJ40_08920) - 1757023..1757646 (-) 624 WP_000139720.1 DUF1071 domain-containing protein -
  IUJ40_RS08915 (IUJ40_08925) - 1757639..1757860 (-) 222 WP_000815403.1 DUF2483 family protein -
  IUJ40_RS08920 (IUJ40_08930) - 1757870..1758130 (-) 261 WP_000291076.1 DUF1108 family protein -
  IUJ40_RS08925 (IUJ40_08935) - 1758224..1758385 (-) 162 WP_000066026.1 DUF1270 family protein -
  IUJ40_RS08930 - 1758378..1758515 (-) 138 WP_000230552.1 hypothetical protein -
  IUJ40_RS08935 (IUJ40_08940) - 1758565..1758795 (+) 231 WP_000395455.1 hypothetical protein -
  IUJ40_RS08940 (IUJ40_08945) - 1758962..1759714 (-) 753 WP_023487064.1 phage antirepressor KilAC domain-containing protein -
  IUJ40_RS08945 (IUJ40_08950) - 1759716..1759901 (-) 186 WP_000933363.1 helix-turn-helix domain-containing protein -
  IUJ40_RS08950 (IUJ40_08955) - 1760341..1760550 (+) 210 WP_000642492.1 hypothetical protein -
  IUJ40_RS08955 (IUJ40_08960) - 1760540..1760683 (-) 144 WP_000939498.1 hypothetical protein -
  IUJ40_RS08960 (IUJ40_08965) - 1760698..1761141 (-) 444 WP_023487065.1 hypothetical protein -
  IUJ40_RS08965 (IUJ40_08970) - 1761167..1761943 (-) 777 WP_001148544.1 Rha family transcriptional regulator -
  IUJ40_RS08970 (IUJ40_08975) - 1761957..1762193 (-) 237 WP_001121027.1 helix-turn-helix transcriptional regulator -
  IUJ40_RS08975 (IUJ40_08980) - 1762345..1762659 (+) 315 WP_000333630.1 helix-turn-helix domain-containing protein -
  IUJ40_RS08980 (IUJ40_08985) - 1762672..1763136 (+) 465 WP_023487066.1 toxin-antitoxin system toxin component -
  IUJ40_RS08985 (IUJ40_08990) - 1763168..1763848 (+) 681 WP_000392109.1 type II toxin-antitoxin system PemK/MazF family toxin -
  IUJ40_RS08990 (IUJ40_08995) - 1764055..1765440 (+) 1386 WP_023487067.1 recombinase family protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15784.48 Da        Isoelectric Point: 8.4826

>NTDB_id=501590 IUJ40_RS08905 WP_000934384.1 1756598..1757023(-) (ssbA) [Staphylococcus aureus strain PartE-Saureus-RM8376]
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=501590 IUJ40_RS08905 WP_000934384.1 1756598..1757023(-) (ssbA) [Staphylococcus aureus strain PartE-Saureus-RM8376]
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGATTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

73.729

83.688

0.617
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.603
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

75.177

0.44
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.844

100

0.418
  ssbA Streptococcus mutans UA159

46.087

81.56

0.376
  ssbB/cilA Streptococcus mitis NCTC 12261

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae Rx1

44.068

83.688

0.369
  ssbB/cilA Streptococcus pneumoniae D39

44.068

83.688

0.369
  ssbB/cilA Streptococcus pneumoniae R6

44.068

83.688

0.369
  ssbB/cilA Streptococcus mitis SK321

44.068

83.688

0.369