Detailed information NTG0501490

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: IUJ49_RS20870
• Genome accession: NZ_CP064382
• Coordinates: 4518712..4519953 (+)
• Length: 413 a.a.
• NCBI ID: WP_045525683.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain PartN-Ahydrophila-RM8376
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4513712..4524953

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUJ49_RS20845 (IUJ49_20835)	ampD	4514079..4514651 (-)	573	WP_045525676.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
IUJ49_RS20850 (IUJ49_20840)	-	4514799..4515269 (+)	471	WP_024944772.1	retropepsin-like aspartic protease	-
IUJ49_RS20855 (IUJ49_20845)	nadC	4515275..4516132 (+)	858	WP_045525678.1	carboxylating nicotinate-nucleotide diphosphorylase	-
IUJ49_RS20860 (IUJ49_20850)	-	4516455..4516886 (+)	432	WP_106551646.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
IUJ49_RS20865 (IUJ49_20855)	pilB	4516890..4518596 (+)	1707	WP_045525681.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
IUJ49_RS20870 (IUJ49_20860)	pilC	4518712..4519953 (+)	1242	WP_045525683.1	type II secretion system F family protein	Machinery gene
IUJ49_RS20875 (IUJ49_20865)	pilD	4519976..4520848 (+)	873	WP_045525685.1	A24 family peptidase	Machinery gene
IUJ49_RS20880 (IUJ49_20870)	coaE	4520868..4521482 (+)	615	WP_045525686.1	dephospho-CoA kinase	-
IUJ49_RS20885 (IUJ49_20875)	zapD	4521520..4522242 (+)	723	WP_024945431.1	cell division protein ZapD	-
IUJ49_RS20890 (IUJ49_20880)	yacG	4522252..4522446 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
IUJ49_RS20895 (IUJ49_20885)	mutT	4522507..4522920 (-)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
IUJ49_RS20900 (IUJ49_20890)	-	4522929..4524113 (-)	1185	WP_045525689.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 413 a.a.
• Molecular weight: 45433.56 Da
• Isoelectric Point: 9.8638

>NTDB_id=501490 IUJ49_RS20870 WP_045525683.1 4518712..4519953(+) (pilC) [Aeromonas hydrophila strain PartN-Ahydrophila-RM8376]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSTNTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQHWWYVIFGGIA
LAIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide

• Length: 1242 bp

>NTDB_id=501490 IUJ49_RS20870 WP_045525683.1 4518712..4519953(+) (pilC) [Aeromonas hydrophila strain PartN-Ahydrophila-RM8376]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCTTTTCGCTGGAGCGGGGTAAATCGCAAGGGCCA
GAAGGTCTCCGGCGAATTGCAGGCCGACAGCACCAACACGGTCAAGGCAGAGCTGCGCAAACAGGGTGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATCGCCGTCGTCTCCCGC
CAGATCACCACCATGCTGTCAGCCGGCGTACCTCTGGTCCAAAGCCTGCAAATCATCGCTCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTCATGGGGCAGATTGCCGCCGATGTGGAGACCGGCACGCCCATGTCCGAGGCGCTGCGCCGCCATCCCC
GTCACTTTGACGATCTCTACTGCGATCTGGTGGAGGCTGGCGAACAATCCGGCGCCCTGGAGACCATCTACGATCGCATC
GCTACCTATCGCGAGAAATCGGAAGCACTCAAGTCCAAGATCAAGAAAGCCATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATTGTCGTTACCTCCATCCTGCTGCTGTTCGTCATTCCCCAGTTCGAGGACATCTTCAAGAGCTTTGGTGCCGAGC
TGCCCATCTTCACCCAGTTCGTCATCGGTATCTCCCGCTTCATGCAACACTGGTGGTATGTGATCTTCGGTGGCATAGCG
CTCGCCATCTTTCTCTATGTGCGTGCCTGGCGCGCCTCCCAGAAGGTCAAGGACAACACCGACAAGTTCATATTGACCAT
CCCCGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGCTTCGCCCGTACCCTCTCCACTACCTTCTCCGCCGGTA
TTCCACTGGTGGATGCCTTGGTCTCTGCGGCAGGCGCCTCTGGCAACTATGTCTATCGCACTGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTCGATCTGTTCCCGGACATGGTGATCCAGATGGT
GATGATCGGCGAGGAGTCTGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAGCAAGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCTCTCATCATGGTGGTGTTGGGGGTTCTGGTCGGCGGCATGGTGGTCGCC
ATGTATCTGCCCATCTTCAAACTGGGATCGGTGATCCACTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (79-201)

• Type II secretion system (T2SS), protein F (T2SSF) (282-404)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	57.323	95.884	0.55
pilC	Acinetobacter baumannii D1279779	54	96.852	0.523
pilC	Legionella pneumophila strain ERS1305867	51.358	98.063	0.504
pilC	Acinetobacter baylyi ADP1	52.141	96.126	0.501
pilC	Vibrio cholerae strain A1552	47.739	96.368	0.46
pilC	Vibrio campbellii strain DS40M4	46.096	96.126	0.443
pilG	Neisseria gonorrhoeae MS11	40.247	98.063	0.395
pilG	Neisseria meningitidis 44/76-A	40	98.063	0.392
pilC	Thermus thermophilus HB27	37.75	96.852	0.366