Detailed information NTG0501491

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IUJ49_RS20875
• Genome accession: NZ_CP064382
• Coordinates: 4519976..4520848 (+)
• Length: 290 a.a.
• NCBI ID: WP_045525685.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain PartN-Ahydrophila-RM8376
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4514976..4525848

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUJ49_RS20855 (IUJ49_20845)	nadC	4515275..4516132 (+)	858	WP_045525678.1	carboxylating nicotinate-nucleotide diphosphorylase	-
IUJ49_RS20860 (IUJ49_20850)	-	4516455..4516886 (+)	432	WP_106551646.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
IUJ49_RS20865 (IUJ49_20855)	pilB	4516890..4518596 (+)	1707	WP_045525681.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
IUJ49_RS20870 (IUJ49_20860)	pilC	4518712..4519953 (+)	1242	WP_045525683.1	type II secretion system F family protein	Machinery gene
IUJ49_RS20875 (IUJ49_20865)	pilD	4519976..4520848 (+)	873	WP_045525685.1	A24 family peptidase	Machinery gene
IUJ49_RS20880 (IUJ49_20870)	coaE	4520868..4521482 (+)	615	WP_045525686.1	dephospho-CoA kinase	-
IUJ49_RS20885 (IUJ49_20875)	zapD	4521520..4522242 (+)	723	WP_024945431.1	cell division protein ZapD	-
IUJ49_RS20890 (IUJ49_20880)	yacG	4522252..4522446 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
IUJ49_RS20895 (IUJ49_20885)	mutT	4522507..4522920 (-)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
IUJ49_RS20900 (IUJ49_20890)	-	4522929..4524113 (-)	1185	WP_045525689.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32408.71 Da
• Isoelectric Point: 6.4795

>NTDB_id=501491 IUJ49_RS20875 WP_045525685.1 4519976..4520848(+) (pilD) [Aeromonas hydrophila strain PartN-Ahydrophila-RM8376]
MLIITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETLPQQEEPYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRACQAPISARYPLVELLTALLSLVVAATYPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLTGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNNPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=501491 IUJ49_RS20875 WP_045525685.1 4519976..4520848(+) (pilD) [Aeromonas hydrophila strain PartN-Ahydrophila-RM8376]
ATGTTGATTATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTACTTCTCGCTGGTATTTCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCGGAAACACTGCCGCAGCAGGAAGAGCCCTACAACCTGATGGTGCCGCGTTCTGCCTGTCCCCATTGCGGCCACGCC
ATCACAGCCATGGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGCATGCCAGGCCCCTATCTC
GGCCCGTTATCCTCTGGTGGAATTGCTGACGGCCCTGCTCTCACTGGTCGTCGCAGCAACATACCCACCGGGCTGGGGCT
TGCTGGCCGCCCTGTTGCTCACTTGGGTACTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTGCTGCCTGACCAG
CTGACCCTGCCACTGCTGTGGGGCGGTCTGCTGTTCAATCTGACAGGGGGATTTGTACCGCTGGCCGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAAGCACTGCCCATCGTATTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATTCTGCTGCGCAACCATCATCAGAACAACCCCATCCCCTTCGGCCCCTATCT
GGCCATCGCCGGCTGGATCGCACTGTTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.189	98.621	0.603
pilD	Vibrio campbellii strain DS40M4	55.245	98.621	0.545
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Acinetobacter baumannii D1279779	53.873	97.931	0.528
pilD	Neisseria gonorrhoeae MS11	49.451	94.138	0.466