Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IUJ52_RS09700 Genome accession   NZ_CP064379
Coordinates   2073588..2075312 (+) Length   574 a.a.
NCBI ID   WP_004728568.1    Uniprot ID   -
Organism   Vibrio furnissii strain PartQ-Vfurnissii-RM8376     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2068588..2080312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ52_RS09680 (IUJ52_09675) pilM 2070894..2071898 (+) 1005 WP_004728564.1 type IV pilus assembly protein PilM Machinery gene
  IUJ52_RS09685 (IUJ52_09680) pilN 2071888..2072478 (+) 591 WP_004728565.1 PilN domain-containing protein Machinery gene
  IUJ52_RS09690 (IUJ52_09685) pilO 2072471..2073061 (+) 591 WP_004728566.1 type 4a pilus biogenesis protein PilO Machinery gene
  IUJ52_RS09695 (IUJ52_09690) pilP 2073051..2073563 (+) 513 WP_004728567.1 pilus assembly protein PilP Machinery gene
  IUJ52_RS09700 (IUJ52_09695) pilQ 2073588..2075312 (+) 1725 WP_004728568.1 type IV pilus secretin PilQ family protein Machinery gene
  IUJ52_RS09705 (IUJ52_09700) aroK 2075500..2076018 (+) 519 WP_004728569.1 shikimate kinase AroK -
  IUJ52_RS09710 (IUJ52_09705) aroB 2076046..2077131 (+) 1086 WP_004728570.1 3-dehydroquinate synthase -
  IUJ52_RS09715 (IUJ52_09710) - 2077177..2078697 (+) 1521 WP_004728571.1 AAA family ATPase -
  IUJ52_RS09720 (IUJ52_09715) - 2078792..2079622 (+) 831 WP_004728572.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 61928.62 Da        Isoelectric Point: 4.4610

>NTDB_id=501450 IUJ52_RS09700 WP_004728568.1 2073588..2075312(+) (pilQ) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
MIKGLNASTAWGIRCLFVGVCLLLSAATLAQEAAANQLKNIDFRINKDKAAVLIVELASASAVVDVQKTEQGLTIELLKT
DVSDDKLYLVDVRDFATAVENIEVFRQQPSTVLVATVQGAFNYEYSLKGNYLEVVISKVSAQEPQPKSVLEKEGKLISIN
FQDIPVRNVLQLIADYNQFNLVVSDSVSGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKEELDRREQQQLEK
ARMAEELGDLQSEIIKINFAKASDIAQMIGGDGAVNMLSERGSISIDERTNALLLRELPDNIHVIRDIVASLDIPVKQVQ
IEARIVTVNEGDLDELGVRWGFSSTNGSTTTGGSIESNLGAIGLYDGSSDSGDGAAIDDFLNVNLAATSANASSIAFQVA
KLGADTLLDLELSAMQRESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLV
LDLSVTQDRPGEVVKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHSVTSSVDKVPLLGDLPLLGALFRRSYEQMGK
SELLIFVTPKVVIQ

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=501450 IUJ52_RS09700 WP_004728568.1 2073588..2075312(+) (pilQ) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
ATGATTAAAGGACTAAATGCCTCCACGGCTTGGGGAATACGTTGTCTGTTTGTGGGCGTATGCCTGCTGTTATCTGCCGC
CACATTAGCCCAGGAAGCGGCGGCCAATCAGCTGAAAAATATTGACTTTCGCATCAATAAAGACAAAGCGGCGGTGTTGA
TTGTCGAACTGGCGTCGGCTTCTGCGGTGGTGGATGTGCAGAAAACGGAGCAAGGATTGACGATTGAATTGCTTAAAACC
GATGTTAGCGATGACAAACTGTATTTGGTGGACGTGCGCGATTTTGCCACGGCGGTGGAAAACATCGAAGTGTTTCGCCA
GCAACCGAGCACGGTGCTGGTGGCGACGGTGCAAGGGGCATTCAATTACGAATACAGCCTGAAAGGCAATTACTTGGAGG
TGGTGATCAGCAAAGTCAGTGCGCAAGAACCGCAACCGAAAAGTGTCTTAGAGAAAGAGGGCAAGCTGATTTCGATTAAC
TTCCAAGATATTCCCGTGCGCAACGTACTGCAGCTTATCGCCGACTACAACCAGTTCAACTTGGTGGTCTCTGATTCCGT
CAGCGGTAACTTGACATTGCGCCTCGATGGCGTGCCGTGGCAACAAGTGCTGGATATCATTTTACAAGTCAAAGGGCTGG
ACAAACGGGTCGATGGCAACGTCATTCTGGTGGCACCCAAAGAGGAGCTGGACCGACGCGAGCAGCAGCAATTGGAAAAG
GCGCGCATGGCGGAAGAGCTGGGTGATCTGCAATCGGAAATCATCAAAATCAATTTTGCCAAGGCATCCGACATTGCACA
GATGATTGGCGGCGATGGCGCGGTGAACATGTTGTCAGAGCGCGGCTCCATCAGTATTGATGAGCGCACCAATGCCTTGC
TACTGCGCGAGCTGCCTGACAACATTCACGTGATCCGCGACATCGTGGCCTCTCTCGACATTCCGGTTAAACAAGTGCAA
ATCGAAGCGCGCATCGTCACGGTGAATGAGGGCGATTTGGATGAGCTTGGCGTGCGCTGGGGCTTTAGCTCCACCAATGG
GAGTACCACCACCGGGGGTTCGATTGAAAGTAATCTCGGTGCCATTGGGTTGTATGACGGCAGCAGTGATTCGGGCGATG
GCGCCGCGATTGATGATTTCCTCAATGTGAACCTTGCTGCTACCTCCGCCAATGCATCCAGTATTGCGTTTCAAGTCGCC
AAGCTGGGCGCTGACACCTTGCTTGATCTTGAATTGTCGGCGATGCAGCGCGAGTCGAAAGCGGAAATTATTTCCAGCCC
AAGACTGATTACCACCAACAAACAGCCGGCTTACATTGAACAGGGGACGGAAATTCCTTATCTCGAATCGTCTTCCAGTG
GCGCAACCAGCGTGGCATTTAAAAAAGCGGTCCTCAGCCTCAAAGTGACCCCGCAAATCACGCCTGACAACCGTTTGGTG
CTCGATTTGAGCGTGACCCAAGACCGACCGGGTGAAGTGGTGAAAACGGGCACGGGCGAAGCGGTGGCGATTAACACGCA
GCGTATTGGGACCCAAGTGTTAGTTAATAACGGTGAAACCGTGGTGCTGGGCGGCATTTTTCAACACAGCGTGACCAGTT
CTGTGGACAAAGTGCCCTTGCTTGGGGACTTGCCATTACTGGGCGCGCTGTTCCGTCGCAGCTACGAACAGATGGGGAAA
AGTGAGCTACTGATCTTCGTCACGCCGAAAGTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(253-318)

Secretin and TonB N terminus short domain (STN)

(179-227)

Bacterial type II and III secretion system protein (Secretin)

(414-572)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

80.556

100

0.808
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

80.556

100

0.808
  pilQ Vibrio campbellii strain DS40M4

77.413

95.645

0.74
  pilQ Legionella pneumophila strain ERS1305867

41.575

95.122

0.395
  pilQ Legionella pneumophila strain Lp02

41.575

95.122

0.395
  comQ Acinetobacter baylyi ADP1

38.737

100

0.395
  pilQ Pseudomonas aeruginosa PAK

40.468

96.864

0.392
  pilQ Acinetobacter baumannii D1279779

37.113

100

0.376
  pilQ Acinetobacter baumannii strain A118

37.113

100

0.376