Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IUJ52_RS09685 Genome accession   NZ_CP064379
Coordinates   2071888..2072478 (+) Length   196 a.a.
NCBI ID   WP_004728565.1    Uniprot ID   -
Organism   Vibrio furnissii strain PartQ-Vfurnissii-RM8376     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2066888..2077478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ52_RS09670 (IUJ52_09665) oxyR 2067287..2068183 (+) 897 WP_004728562.1 DNA-binding transcriptional regulator OxyR -
  IUJ52_RS09675 (IUJ52_09670) - 2068269..2070749 (-) 2481 WP_038152617.1 PBP1A family penicillin-binding protein -
  IUJ52_RS09680 (IUJ52_09675) pilM 2070894..2071898 (+) 1005 WP_004728564.1 type IV pilus assembly protein PilM Machinery gene
  IUJ52_RS09685 (IUJ52_09680) pilN 2071888..2072478 (+) 591 WP_004728565.1 PilN domain-containing protein Machinery gene
  IUJ52_RS09690 (IUJ52_09685) pilO 2072471..2073061 (+) 591 WP_004728566.1 type 4a pilus biogenesis protein PilO Machinery gene
  IUJ52_RS09695 (IUJ52_09690) pilP 2073051..2073563 (+) 513 WP_004728567.1 pilus assembly protein PilP Machinery gene
  IUJ52_RS09700 (IUJ52_09695) pilQ 2073588..2075312 (+) 1725 WP_004728568.1 type IV pilus secretin PilQ family protein Machinery gene
  IUJ52_RS09705 (IUJ52_09700) aroK 2075500..2076018 (+) 519 WP_004728569.1 shikimate kinase AroK -
  IUJ52_RS09710 (IUJ52_09705) aroB 2076046..2077131 (+) 1086 WP_004728570.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21982.09 Da        Isoelectric Point: 8.1543

>NTDB_id=501447 IUJ52_RS09685 WP_004728565.1 2071888..2072478(+) (pilN) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
MVHDINLMPWREARREAHKHRFAGLCVLAVLAALGLQWGAGAYIDRQTQVQQQRLDFLNQHIRDLDSQIAALKVTEQEHK
ALLTRLSVVESLQQKRNKTTEFMNLMPQLIPEGVYVDKIKMNGQEIELSGISDSTARLATMLDNLEKSDQLSEVGMHSIV
AGNRRFGKQFQSFKVSFLFHASSQQAVSADTGGAHG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=501447 IUJ52_RS09685 WP_004728565.1 2071888..2072478(+) (pilN) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
ATGGTGCATGACATCAATTTAATGCCGTGGCGAGAAGCGCGGCGCGAAGCCCATAAACACCGTTTTGCCGGTCTGTGCGT
GCTGGCGGTGCTGGCCGCGTTGGGACTGCAATGGGGCGCAGGAGCGTATATCGACCGTCAAACACAAGTGCAGCAACAAC
GGCTGGATTTTCTCAACCAACATATTCGTGACTTAGACAGCCAAATTGCGGCGCTGAAGGTGACCGAGCAAGAGCATAAG
GCATTGTTGACCCGCTTGTCGGTGGTGGAGTCGTTGCAGCAGAAACGTAACAAGACCACGGAGTTCATGAACTTGATGCC
TCAACTGATCCCGGAAGGCGTCTACGTCGACAAAATCAAAATGAACGGTCAGGAAATTGAGCTGAGTGGCATCAGCGACA
GCACCGCGCGGCTGGCAACCATGCTCGATAATTTGGAGAAATCCGACCAACTGTCTGAGGTCGGTATGCATTCGATTGTG
GCGGGTAACCGTCGGTTTGGTAAGCAATTTCAGAGTTTTAAAGTGTCGTTCTTGTTCCACGCTTCATCGCAGCAAGCGGT
GAGTGCTGATACCGGAGGTGCCCATGGCTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

69.036

100

0.694
  pilN Vibrio campbellii strain DS40M4

62.842

93.367

0.587