Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | IS481_RS00830 | Genome accession | NZ_CP064338 |
| Coordinates | 167321..167764 (+) | Length | 147 a.a. |
| NCBI ID | WP_104357389.1 | Uniprot ID | A0A2S5T4V3 |
| Organism | Caldimonas thermodepolymerans strain DSM 15344 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 162321..172764
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IS481_RS00810 (IS481_00810) | - | 162507..163292 (+) | 786 | WP_104357386.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| IS481_RS00815 (IS481_00815) | - | 163325..164002 (+) | 678 | WP_104357387.1 | FHA domain-containing protein | - |
| IS481_RS00820 (IS481_00820) | - | 164109..166358 (+) | 2250 | WP_232529397.1 | CHASE2 domain-containing protein | - |
| IS481_RS00825 (IS481_00825) | - | 166396..167157 (+) | 762 | WP_104357388.1 | MBL fold metallo-hydrolase | - |
| IS481_RS00830 (IS481_00830) | pilA | 167321..167764 (+) | 444 | WP_104357389.1 | pilin | Machinery gene |
| IS481_RS00835 (IS481_00835) | - | 167879..169795 (+) | 1917 | WP_104357390.1 | sulfatase-like hydrolase/transferase | - |
| IS481_RS00840 (IS481_00840) | - | 170124..171083 (+) | 960 | WP_146079529.1 | methyltransferase family protein | - |
| IS481_RS00845 (IS481_00845) | - | 171080..172033 (+) | 954 | WP_170067456.1 | serine hydrolase domain-containing protein | - |
Sequence
Protein
Download Length: 147 a.a. Molecular weight: 14862.82 Da Isoelectric Point: 4.3417
>NTDB_id=500843 IS481_RS00830 WP_104357389.1 167321..167764(+) (pilA) [Caldimonas thermodepolymerans strain DSM 15344]
MKQLRPIQRVQQGFTLIELMIVVAIIGILAAIALPAYQDYTVRARVSEGLVIASGAKATVSENLAADTDDACAGVNTGTI
GRTTLSCSGDGVLSVSVSATSSIDVDLTLTPTADSSGVTWACAVTNPDQAKYVPAECRGTGGGSTGG
MKQLRPIQRVQQGFTLIELMIVVAIIGILAAIALPAYQDYTVRARVSEGLVIASGAKATVSENLAADTDDACAGVNTGTI
GRTTLSCSGDGVLSVSVSATSSIDVDLTLTPTADSSGVTWACAVTNPDQAKYVPAECRGTGGGSTGG
Nucleotide
Download Length: 444 bp
>NTDB_id=500843 IS481_RS00830 WP_104357389.1 167321..167764(+) (pilA) [Caldimonas thermodepolymerans strain DSM 15344]
ATGAAGCAACTTCGTCCCATCCAGCGCGTGCAACAAGGTTTCACGCTGATCGAACTGATGATCGTCGTGGCGATCATCGG
TATCCTGGCTGCGATCGCGCTGCCGGCTTACCAGGACTACACCGTCCGCGCCCGCGTGTCGGAAGGCCTGGTGATCGCCT
CCGGCGCCAAGGCCACCGTCTCCGAAAACCTGGCTGCCGACACCGATGACGCCTGCGCCGGCGTGAACACAGGTACGATC
GGCCGGACCACCCTGAGCTGCAGCGGCGATGGCGTGCTGTCGGTGAGCGTGTCGGCGACCAGCTCCATCGACGTGGACCT
GACGCTGACCCCGACCGCCGACAGCTCTGGCGTGACCTGGGCGTGCGCCGTGACGAACCCCGACCAAGCGAAGTACGTTC
CTGCCGAGTGCCGTGGTACGGGTGGTGGCTCCACCGGCGGCTGA
ATGAAGCAACTTCGTCCCATCCAGCGCGTGCAACAAGGTTTCACGCTGATCGAACTGATGATCGTCGTGGCGATCATCGG
TATCCTGGCTGCGATCGCGCTGCCGGCTTACCAGGACTACACCGTCCGCGCCCGCGTGTCGGAAGGCCTGGTGATCGCCT
CCGGCGCCAAGGCCACCGTCTCCGAAAACCTGGCTGCCGACACCGATGACGCCTGCGCCGGCGTGAACACAGGTACGATC
GGCCGGACCACCCTGAGCTGCAGCGGCGATGGCGTGCTGTCGGTGAGCGTGTCGGCGACCAGCTCCATCGACGTGGACCT
GACGCTGACCCCGACCGCCGACAGCTCTGGCGTGACCTGGGCGTGCGCCGTGACGAACCCCGACCAAGCGAAGTACGTTC
CTGCCGAGTGCCGTGGTACGGGTGGTGGCTCCACCGGCGGCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
45.833 |
100 |
0.524 |
| comP | Acinetobacter baylyi ADP1 |
51.37 |
99.32 |
0.51 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
48.148 |
91.837 |
0.442 |
| pilA2 | Legionella pneumophila str. Paris |
48.148 |
91.837 |
0.442 |
| pilA | Vibrio campbellii strain DS40M4 |
41.611 |
100 |
0.422 |
| pilA/pilA1 | Eikenella corrodens VA1 |
37.013 |
100 |
0.388 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40 |
95.238 |
0.381 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
36.129 |
100 |
0.381 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
41.481 |
91.837 |
0.381 |
| pilA | Haemophilus influenzae 86-028NP |
34.839 |
100 |
0.367 |