Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KE3_RS00330 Genome accession   NC_021900
Coordinates   59646..60041 (+) Length   131 a.a.
NCBI ID   WP_020916006.1    Uniprot ID   A0AB33AJI7
Organism   Streptococcus lutetiensis 033     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 54646..65041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KE3_RS00295 (KE3_0061) - 54855..55490 (+) 636 WP_043894885.1 CPBP family intramembrane glutamic endopeptidase -
  KE3_RS00300 (KE3_0062) proC 55527..56297 (-) 771 WP_020916000.1 pyrroline-5-carboxylate reductase -
  KE3_RS00305 (KE3_0063) pepA 56359..57426 (-) 1068 WP_020916001.1 glutamyl aminopeptidase -
  KE3_RS00310 (KE3_0064) - 57544..57837 (+) 294 WP_043894886.1 DUF4651 domain-containing protein -
  KE3_RS00315 (KE3_0065) - 57830..58147 (+) 318 WP_020916003.1 thioredoxin family protein -
  KE3_RS00320 (KE3_0066) ytpR 58156..58782 (+) 627 WP_020916004.1 YtpR family tRNA-binding protein -
  KE3_RS00325 (KE3_0067) - 58819..59535 (-) 717 WP_020916005.1 class I SAM-dependent methyltransferase -
  KE3_RS00330 (KE3_0068) ssbA 59646..60041 (+) 396 WP_020916006.1 single-stranded DNA-binding protein Machinery gene
  KE3_RS10385 (KE3_0069) - 60226..60303 (+) 78 Protein_62 IS6 family transposase -
  KE3_RS00340 (KE3_0070) - 60422..61720 (-) 1299 WP_020916007.1 polysaccharide deacetylase family protein -
  KE3_RS00345 (KE3_0071) - 61889..62569 (+) 681 WP_043894889.1 IS6 family transposase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14805.80 Da        Isoelectric Point: 5.2678

>NTDB_id=50000 KE3_RS00330 WP_020916006.1 59646..60041(+) (ssbA) [Streptococcus lutetiensis 033]
MYNKVIMIGRLTAQPELVTTPTEKSVTRVTLAVNRRFKSQNGEREADFISLVVWGSLAETLVSYAGKGSLISVDGELRTR
KYEKDGHTNYVTEVLCHSFQLLESRAQRAMRENNVANDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=50000 KE3_RS00330 WP_020916006.1 59646..60041(+) (ssbA) [Streptococcus lutetiensis 033]
ATGTATAATAAAGTTATTATGATTGGGCGTTTGACAGCGCAGCCTGAATTGGTGACAACGCCAACCGAAAAATCTGTTAC
ACGTGTAACACTAGCCGTTAACCGTCGTTTTAAATCACAAAATGGTGAGCGTGAAGCGGATTTTATTTCGCTTGTGGTTT
GGGGGAGTTTAGCAGAAACGCTCGTTTCTTATGCTGGAAAAGGGAGTTTGATTTCTGTTGATGGAGAGCTTCGTACGCGT
AAATACGAAAAAGATGGTCACACCAATTATGTGACAGAAGTGCTCTGCCATTCTTTCCAACTTTTAGAAAGTCGTGCCCA
ACGTGCCATGCGAGAAAATAATGTGGCAAACGACCTCGCTGACTTAGTTTTAGAAGAGGAAGAATTGCCGTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AB33AJI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

80.153

100

0.802
  ssbB Streptococcus sobrinus strain NIDR 6715-7

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae Rx1

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae D39

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae R6

77.099

100

0.771
  ssbB/cilA Streptococcus mitis NCTC 12261

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae TIGR4

76.336

100

0.763
  ssbB/cilA Streptococcus mitis SK321

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

45.299

89.313

0.405