Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IS519_RS13265 Genome accession   NZ_CP064170
Coordinates   2894210..2895439 (-) Length   409 a.a.
NCBI ID   WP_048612336.1    Uniprot ID   -
Organism   Vibrio crassostreae strain ED395     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2889210..2900439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS519_RS13225 (IS519_13215) rpsP 2889288..2889536 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  IS519_RS13230 (IS519_13220) rimM 2889561..2890115 (+) 555 WP_048612338.1 ribosome maturation factor RimM -
  IS519_RS13235 (IS519_13225) trmD 2890142..2890882 (+) 741 WP_017061056.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  IS519_RS13240 (IS519_13230) rplS 2890942..2891295 (+) 354 WP_004735514.1 50S ribosomal protein L19 -
  IS519_RS13245 (IS519_13235) yacG 2891612..2891809 (-) 198 WP_019823814.1 DNA gyrase inhibitor YacG -
  IS519_RS13250 (IS519_13240) zapD 2891891..2892631 (-) 741 WP_017063237.1 cell division protein ZapD -
  IS519_RS13255 (IS519_13245) coaE 2892658..2893272 (-) 615 WP_248639138.1 dephospho-CoA kinase -
  IS519_RS13260 (IS519_13250) pilD 2893275..2894144 (-) 870 WP_017058945.1 A24 family peptidase Machinery gene
  IS519_RS13265 (IS519_13255) pilC 2894210..2895439 (-) 1230 WP_048612336.1 type II secretion system F family protein Machinery gene
  IS519_RS13270 (IS519_13260) pilB 2895455..2897140 (-) 1686 WP_248639141.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IS519_RS13275 (IS519_13265) pilA 2897140..2897610 (-) 471 WP_248639143.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  IS519_RS13280 (IS519_13270) nadC 2897864..2898754 (-) 891 WP_248639145.1 carboxylating nicotinate-nucleotide diphosphorylase -
  IS519_RS13285 (IS519_13275) ampD 2898838..2899437 (+) 600 WP_248639148.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45219.23 Da        Isoelectric Point: 10.1285

>NTDB_id=499953 IS519_RS13265 WP_048612336.1 2894210..2895439(-) (pilC) [Vibrio crassostreae strain ED395]
MSSKSKQSQLKSYHWKGINSSGKKVSGQTLALTELEVREKLKEQHIQIKKIKKKSISAVTRLTHRVKAKDITILTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKSKVVKALIYPAMVVTVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLYLSHWMQAYSFYTAVGIGLVVL
TIYQLCQRSHSIRLSVSRLGLRFPVLGGVLAKASIAKFSRTLSTSFSSGIPILMSLKTTAKTAGNLHYESAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=499953 IS519_RS13265 WP_048612336.1 2894210..2895439(-) (pilC) [Vibrio crassostreae strain ED395]
ATGAGTAGCAAGTCCAAACAATCACAATTAAAAAGCTATCACTGGAAAGGCATTAACAGCTCAGGCAAGAAAGTGTCTGG
GCAAACCTTAGCGCTCACCGAATTGGAAGTACGAGAAAAGCTCAAAGAACAGCATATTCAGATCAAGAAAATCAAAAAGA
AAAGTATTTCAGCCGTCACTCGTTTAACTCATAGAGTCAAAGCCAAAGACATCACTATTTTGACTAGGCAACTTGCTACT
ATGCTCGCCACTGGTGTGCCTATCGTGCAAGCCATCAAGTTGGTGTCTGACAACCATCGCAAAGCTGAAATGAAATCGAT
TCTATCGCATATCTGCAAAGGTGTAGAAGCCGGTACGCCAATCTCAAAAGCGATGCGAACCGCAAGTCGTCACTTTGATG
ACCTCTATACTGATTTGGTCGCGACCGGCGAGCTCTCCGGTAACCTCGCACAAGTATTCGAACGCTTAGCGACCTATAGA
GAAAAGAGCGAGCAGTTAAAATCCAAAGTCGTCAAAGCACTGATCTACCCCGCCATGGTGGTCACCGTTGCACTGACCGT
TTCTTATTTAATGCTGACTATGGTGATTCCGGAGTTTGAGTCGATGTTTTCAGGCTTTGGCGCCGACCTGCCTTGGTTCA
CCCAACAAGTACTCTACCTTTCCCATTGGATGCAGGCTTACAGTTTTTATACGGCTGTAGGCATCGGGCTTGTTGTCCTG
ACTATTTACCAACTGTGTCAGCGTTCCCACTCGATCAGACTGTCTGTTAGCCGGCTAGGATTACGCTTCCCTGTTCTTGG
TGGCGTATTAGCCAAAGCTTCTATTGCCAAATTCAGCCGAACCTTATCAACCAGCTTTAGTTCCGGCATTCCTATTTTAA
TGAGCCTCAAAACCACCGCTAAAACCGCAGGCAACCTGCATTATGAATCGGCCATCATTGAAGTTCACAGAGAAACAGCT
GCTGGCATGCCAATGTATATCGCAATGCGCAATACCAACGCCTTTCCTGAAATGGTGTTACAGATGGTGATGATCGGTGA
AGAGTCAGGCAACCTTGATGATATGCTTAATAAAGTTGCTTCCATTTACGAGTTTGAAGTCGACAACACCGTCGACAATT
TAGGCAAGATTCTAGAGCCACTGATCATCGTATTTTTAGGGACAGTTGTTGGCGGGCTTGTGGTTGCGATGTACTTACCG
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

79.75

97.8

0.78
  pilC Vibrio campbellii strain DS40M4

73.529

99.756

0.733
  pilC Acinetobacter baylyi ADP1

41.565

100

0.416
  pilC Acinetobacter baumannii D1279779

41.832

98.778

0.413
  pilC Legionella pneumophila strain ERS1305867

42.569

97.066

0.413
  pilC Pseudomonas stutzeri DSM 10701

40.657

96.822

0.394
  pilG Neisseria gonorrhoeae MS11

39.85

97.555

0.389
  pilG Neisseria meningitidis 44/76-A

39.599

97.555

0.386