Detailed information NTG0499952

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IS519_RS13260
• Genome accession: NZ_CP064170
• Coordinates: 2893275..2894144 (-)
• Length: 289 a.a.
• NCBI ID: WP_017058945.1
• Uniprot ID: -
• Organism: Vibrio crassostreae strain ED395
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2888275..2899144

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IS519_RS13225 (IS519_13215)	rpsP	2889288..2889536 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
IS519_RS13230 (IS519_13220)	rimM	2889561..2890115 (+)	555	WP_048612338.1	ribosome maturation factor RimM	-
IS519_RS13235 (IS519_13225)	trmD	2890142..2890882 (+)	741	WP_017061056.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
IS519_RS13240 (IS519_13230)	rplS	2890942..2891295 (+)	354	WP_004735514.1	50S ribosomal protein L19	-
IS519_RS13245 (IS519_13235)	yacG	2891612..2891809 (-)	198	WP_019823814.1	DNA gyrase inhibitor YacG	-
IS519_RS13250 (IS519_13240)	zapD	2891891..2892631 (-)	741	WP_017063237.1	cell division protein ZapD	-
IS519_RS13255 (IS519_13245)	coaE	2892658..2893272 (-)	615	WP_248639138.1	dephospho-CoA kinase	-
IS519_RS13260 (IS519_13250)	pilD	2893275..2894144 (-)	870	WP_017058945.1	A24 family peptidase	Machinery gene
IS519_RS13265 (IS519_13255)	pilC	2894210..2895439 (-)	1230	WP_048612336.1	type II secretion system F family protein	Machinery gene
IS519_RS13270 (IS519_13260)	pilB	2895455..2897140 (-)	1686	WP_248639141.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IS519_RS13275 (IS519_13265)	pilA	2897140..2897610 (-)	471	WP_248639143.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
IS519_RS13280 (IS519_13270)	nadC	2897864..2898754 (-)	891	WP_248639145.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32589.83 Da
• Isoelectric Point: 7.6347

>NTDB_id=499952 IS519_RS13260 WP_017058945.1 2893275..2894144(-) (pilD) [Vibrio crassostreae strain ED395]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRIV
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTMVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=499952 IS519_RS13260 WP_017058945.1 2893275..2894144(-) (pilD) [Vibrio crassostreae strain ED395]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTTCTTATCGGCAGCTTCCTCAA
CGTAGTCATACACCGTTTACCGATTATGATGGAACGCGAATGGCAACAAGAGTGCTCGGAATATTTCTCTCAATATAAAA
TTCCAGCGCCAGAGGGAAAGTTTAATCTCAGCATTCCTCGCTCTACCTGCCCGAAATGCAAAACCCAATTAAGAATCGTC
GATAATATTCCAGTCTTAAGCTGGTTGTTCTTAAAGGGTAAGTGCCACAGCTGTGCTAATCCAATCAGTGCTCGCTACCC
TTTAGTCGAACTACTGACCGCAATACTTTGCACAATGGTTGCTAGCCACTTTGGTTTCAGTTACTACGCCATTGCTTTGA
TTTTTTTCACCTTCGCACTGATTACCGCGACCTTTATCGATCTCGATACTATGTTGTTGCCTGATCAAATCACCTTGCCT
TTGGTATGGTCCGGTATCGCTTTAGCACTGTTTAATATCAGCCCAGTATCGCTGCAAGATTCTGTGGTTGGCGCAATGGC
TGGCTACCTCGCTTTATGGTCTGTTTATTGGCTGTTCAAATTGCTAACAGGTAAAGAAGGCATGGGTTACGGTGACTTCA
AACTCCTGGCTGCACTTGGTGCATGGCTTGGTTGGCAACACCTACCGATGATCATCCTTTTATCTTCGCTCGTAGGCCTT
GTGTTTGGTTTGATTCAACTTCGCCTGAAACAGCAAGGCATCGATAAAGCCTTTCCATTTGGCCCTTACCTTGCAATTGC
GGGTTGGGTAAGCTTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.394	100	0.744
pilD	Vibrio cholerae strain A1552	68.403	99.654	0.682
pilD	Acinetobacter nosocomialis M2	50.936	92.388	0.471
pilD	Acinetobacter baumannii D1279779	50.562	92.388	0.467
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443