Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ISN74_RS03135 Genome accession   NZ_CP064030
Coordinates   758651..759919 (-) Length   422 a.a.
NCBI ID   WP_188797315.1    Uniprot ID   -
Organism   Dyella caseinilytica strain DHOB09     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 753651..764919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISN74_RS03110 (ISN74_03105) - 753661..754395 (-) 735 WP_188797309.1 VTT domain-containing protein -
  ISN74_RS03115 (ISN74_03110) - 754392..754949 (-) 558 WP_188799476.1 nucleoside deaminase -
  ISN74_RS03120 (ISN74_03115) - 755223..756974 (-) 1752 WP_188797311.1 glutamine--tRNA ligase/YqeY domain fusion protein -
  ISN74_RS03125 (ISN74_03120) coaE 757099..757707 (-) 609 WP_188799477.1 dephospho-CoA kinase -
  ISN74_RS03130 (ISN74_03125) pilD 757716..758573 (-) 858 WP_188797313.1 A24 family peptidase Machinery gene
  ISN74_RS03135 (ISN74_03130) pilC 758651..759919 (-) 1269 WP_188797315.1 type II secretion system F family protein Machinery gene
  ISN74_RS03140 (ISN74_03135) pilB 760056..761783 (-) 1728 WP_188797317.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ISN74_RS03145 (ISN74_03140) - 762050..762904 (+) 855 WP_188799478.1 glycosyltransferase family 2 protein -
  ISN74_RS03150 (ISN74_03145) - 762897..764057 (+) 1161 WP_188797318.1 glycosyltransferase family 4 protein -
  ISN74_RS03155 (ISN74_03150) - 764050..764826 (+) 777 WP_188797321.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46152.45 Da        Isoelectric Point: 10.1916

>NTDB_id=498520 ISN74_RS03135 WP_188797315.1 758651..759919(-) (pilC) [Dyella caseinilytica strain DHOB09]
MATVTAATKNTRQQGIQRAQVSQMPTYDWVALDKRGKRMKGAMPAKNASLVKAELRRQGMNPQTVRERSKPLFAGTGKSV
KARDVAIFSRQIATMMASGVPMVQAFDIIADGQRNPRFKNMLVDVKQNIEGGSALHEALGQYPVEFDELYRNLVRAGESA
GVLDTILDTVATYKEKTESIKGKIKKALFYPIMVMVVAVAVIMIMLLFVVPVFAKTFKDAGAQLPAPTQLLVTMSQFMQE
YWWLLIVGVGGSIVAIIMAKKRSVKFAHFLDRVTLKIPVMGNILRQSAIARFSRTLGVTFRAGVPLVEAMDAVAGATGSV
VYAEAVHQMRDDVAVGHQLQLAMRQTGLFPNMVTQMVAIGEESGALDHMLFKCAEFYEEEVSNAVDSLASLLEPLMMVIL
GTVVGGIVIALYLPIFKLAGTF

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=498520 ISN74_RS03135 WP_188797315.1 758651..759919(-) (pilC) [Dyella caseinilytica strain DHOB09]
ATGGCTACGGTTACCGCCGCCACGAAAAACACCCGGCAACAAGGCATCCAGCGAGCCCAGGTCAGCCAGATGCCGACCTA
CGACTGGGTCGCTCTGGACAAGCGCGGCAAGCGCATGAAGGGCGCCATGCCGGCCAAGAACGCCTCTCTGGTGAAAGCCG
AATTGCGCCGGCAGGGCATGAATCCGCAAACGGTACGGGAACGATCCAAACCCTTGTTTGCCGGTACTGGCAAGTCGGTC
AAAGCGCGCGACGTGGCGATCTTCAGCCGACAGATCGCCACCATGATGGCCTCAGGCGTACCGATGGTGCAGGCCTTCGA
CATCATCGCCGATGGTCAGAGGAATCCCCGCTTCAAAAATATGCTGGTCGATGTCAAACAGAACATCGAGGGCGGCTCAG
CCTTGCATGAAGCGCTGGGCCAATATCCGGTCGAATTCGACGAGCTGTACCGCAACTTGGTACGTGCAGGTGAATCGGCA
GGTGTGCTGGATACGATTCTCGATACCGTTGCCACCTATAAAGAAAAAACCGAAAGCATCAAGGGCAAGATCAAGAAAGC
ACTTTTCTATCCCATCATGGTGATGGTGGTTGCTGTTGCGGTCATCATGATCATGCTGTTGTTCGTGGTACCCGTTTTTG
CCAAGACCTTCAAGGATGCCGGCGCACAGCTGCCAGCGCCTACTCAGCTGCTTGTAACAATGTCGCAATTCATGCAGGAG
TACTGGTGGCTTCTTATCGTCGGCGTTGGCGGCAGTATTGTGGCGATCATCATGGCAAAGAAGCGATCGGTGAAATTTGC
GCATTTCCTTGACCGTGTCACCCTGAAAATACCCGTGATGGGCAACATCCTCCGTCAGTCAGCCATTGCACGTTTTTCGC
GCACTCTGGGTGTTACCTTCCGGGCAGGTGTGCCCCTCGTTGAGGCAATGGACGCCGTCGCGGGTGCAACGGGTAGTGTT
GTGTACGCCGAGGCAGTACACCAGATGCGCGATGACGTGGCCGTAGGTCACCAACTGCAGTTGGCCATGCGTCAGACCGG
CCTTTTCCCAAACATGGTCACGCAAATGGTCGCGATCGGCGAAGAATCTGGCGCTTTGGACCACATGTTGTTCAAATGCG
CCGAGTTCTATGAAGAGGAAGTCAGTAACGCCGTCGACTCCCTGGCTTCACTGCTCGAACCTTTGATGATGGTGATCTTG
GGCACGGTGGTCGGTGGCATAGTGATTGCGCTTTACCTCCCCATCTTCAAACTTGCCGGCACGTTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(292-414)

Type II secretion system (T2SS), protein F (T2SSF)

(88-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.453

93.128

0.507
  pilC Acinetobacter baumannii D1279779

51.238

95.735

0.491
  pilC Acinetobacter baylyi ADP1

50.505

93.839

0.474
  pilC Pseudomonas stutzeri DSM 10701

51.02

92.891

0.474
  pilG Neisseria meningitidis 44/76-A

41.299

91.232

0.377
  pilC Vibrio cholerae strain A1552

39.454

95.498

0.377
  pilC Thermus thermophilus HB27

37.857

99.526

0.377
  pilG Neisseria gonorrhoeae MS11

41.406

90.995

0.377
  pilC Vibrio campbellii strain DS40M4

39

94.787

0.37