Detailed information NTG0498519

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IGI28_RS05745
• Genome accession: NZ_CP075484
• Coordinates: 1094761..1095753 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain NT1N25
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1089761..1100753

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IGI28_RS05715	ispD	1089822..1090532 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IGI28_RS05720	ispF	1090532..1091011 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IGI28_RS05725	truD	1091008..1092057 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
IGI28_RS05730	surE	1092038..1092799 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IGI28_RS05735	pcm	1092793..1093419 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IGI28_RS05740	nlpD	1093604..1094698 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
IGI28_RS05745	rpoS	1094761..1095753 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IGI28_RS05750	-	1095874..1096281 (-)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
IGI28_RS05755	-	1096428..1097021 (+)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
IGI28_RS05760	-	1097021..1098448 (+)	1428	WP_000863194.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
IGI28_RS05765	-	1098459..1098695 (+)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
IGI28_RS05770	ygbN	1098735..1100099 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=498519 IGI28_RS05745 WP_000081550.1 1094761..1095753(+) (rpoS) [Escherichia coli strain NT1N25]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=498519 IGI28_RS05745 WP_000081550.1 1094761..1095753(+) (rpoS) [Escherichia coli strain NT1N25]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715