Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ISN74_RS03130 Genome accession   NZ_CP064030
Coordinates   757716..758573 (-) Length   285 a.a.
NCBI ID   WP_188797313.1    Uniprot ID   -
Organism   Dyella caseinilytica strain DHOB09     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 752716..763573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISN74_RS03110 (ISN74_03105) - 753661..754395 (-) 735 WP_188797309.1 VTT domain-containing protein -
  ISN74_RS03115 (ISN74_03110) - 754392..754949 (-) 558 WP_188799476.1 nucleoside deaminase -
  ISN74_RS03120 (ISN74_03115) - 755223..756974 (-) 1752 WP_188797311.1 glutamine--tRNA ligase/YqeY domain fusion protein -
  ISN74_RS03125 (ISN74_03120) coaE 757099..757707 (-) 609 WP_188799477.1 dephospho-CoA kinase -
  ISN74_RS03130 (ISN74_03125) pilD 757716..758573 (-) 858 WP_188797313.1 A24 family peptidase Machinery gene
  ISN74_RS03135 (ISN74_03130) pilC 758651..759919 (-) 1269 WP_188797315.1 type II secretion system F family protein Machinery gene
  ISN74_RS03140 (ISN74_03135) pilB 760056..761783 (-) 1728 WP_188797317.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ISN74_RS03145 (ISN74_03140) - 762050..762904 (+) 855 WP_188799478.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31329.42 Da        Isoelectric Point: 7.4493

>NTDB_id=498519 ISN74_RS03130 WP_188797313.1 757716..758573(-) (pilD) [Dyella caseinilytica strain DHOB09]
MPDLPLTIWVAFAGVLGLLVGSFLNVVILRLPKRLDALWRQEAHDVLGIEASGEPFPPGIVRETSHCPHCKHPLAAYDNI
PLFSWLLLRGRCRYCQTPISIQYPLVELLSTILSAVIVWKFGPTWVALAGLFLTWMLIALSGIDFHTQLLPDQMTLSLLW
VGLLLSLIHLFANPEQAILGAAIGYLSLWSVYWLFKLLTGKEGMGFGDFKLLAALGAWMGPGALLPVILLSSLVGALVGG
TLIALRKHAREVPMPFGPFIAMAGWIWFVAGDDLWHAYMRISGIG

Nucleotide


Download         Length: 858 bp        

>NTDB_id=498519 ISN74_RS03130 WP_188797313.1 757716..758573(-) (pilD) [Dyella caseinilytica strain DHOB09]
ATGCCCGATTTGCCGTTGACCATCTGGGTAGCTTTTGCTGGTGTGCTCGGCTTGTTGGTGGGCAGCTTCCTTAATGTGGT
GATCCTTCGTTTACCCAAACGACTGGATGCCCTCTGGCGCCAAGAAGCTCACGATGTTTTAGGCATAGAAGCATCAGGTG
AACCGTTCCCCCCTGGCATCGTCCGAGAAACTTCGCACTGCCCACATTGCAAGCATCCGCTGGCTGCTTACGACAACATT
CCACTTTTCAGCTGGCTGTTGCTGCGCGGTCGCTGCCGCTACTGCCAGACACCTATTTCCATTCAGTACCCCCTTGTTGA
ACTACTGAGCACGATACTCAGTGCTGTCATCGTCTGGAAGTTCGGTCCGACCTGGGTGGCATTGGCCGGGCTGTTCCTCA
CATGGATGTTGATAGCCCTGTCGGGCATCGACTTTCATACCCAGTTGCTTCCCGATCAAATGACCCTTTCCCTCTTGTGG
GTTGGCTTATTACTGAGCCTGATTCACCTGTTTGCGAATCCGGAACAAGCCATTCTCGGCGCCGCCATCGGCTACCTGAG
CCTGTGGAGCGTGTACTGGCTATTCAAGCTCCTGACCGGCAAGGAAGGCATGGGTTTTGGCGACTTCAAGCTCCTGGCGG
CACTCGGAGCGTGGATGGGACCAGGTGCGCTGCTCCCCGTAATACTGCTCTCCTCCCTGGTAGGCGCTCTTGTCGGCGGT
ACTCTGATCGCGTTGCGCAAACACGCCCGCGAAGTGCCGATGCCATTTGGCCCTTTTATCGCCATGGCGGGTTGGATCTG
GTTTGTCGCAGGTGATGACCTGTGGCATGCCTATATGCGTATTTCTGGTATCGGGTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(131-239)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(15-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

50.538

97.895

0.495
  pilD Acinetobacter nosocomialis M2

50.545

96.491

0.488
  pilD Vibrio cholerae strain A1552

51.493

94.035

0.484
  pilD Vibrio campbellii strain DS40M4

48.551

96.842

0.47
  pilD Neisseria gonorrhoeae MS11

47.955

94.386

0.453