Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ISN32_RS02850 Genome accession   NZ_CP064003
Coordinates   679277..680536 (-) Length   419 a.a.
NCBI ID   WP_064522057.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. translucens strain XtKm9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 674277..685536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISN32_RS20240 - 675354..675548 (+) 195 WP_229017631.1 hypothetical protein -
  ISN32_RS02830 (ISN32_02830) - 675646..676323 (+) 678 WP_003466405.1 response regulator transcription factor -
  ISN32_RS02835 (ISN32_02835) - 676316..677650 (+) 1335 WP_058360086.1 HAMP domain-containing sensor histidine kinase -
  ISN32_RS02840 (ISN32_02840) coaE 677773..678393 (-) 621 WP_058360087.1 dephospho-CoA kinase -
  ISN32_RS02845 (ISN32_02845) - 678407..679270 (-) 864 WP_058359048.1 A24 family peptidase -
  ISN32_RS02850 (ISN32_02850) pilC 679277..680536 (-) 1260 WP_064522057.1 type II secretion system F family protein Machinery gene
  ISN32_RS02855 (ISN32_02855) pilA 680921..681337 (+) 417 WP_128809130.1 pilin Machinery gene
  ISN32_RS02860 (ISN32_02860) - 681429..681797 (-) 369 WP_153476696.1 hypothetical protein -
  ISN32_RS02865 (ISN32_02865) pilB 682060..683796 (+) 1737 WP_058360091.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ISN32_RS02870 (ISN32_02870) - 683806..684423 (-) 618 WP_003477095.1 Fic family protein -
  ISN32_RS02875 (ISN32_02875) - 684420..684602 (-) 183 WP_003477093.1 YhfG family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45493.65 Da        Isoelectric Point: 10.1825

>NTDB_id=498470 ISN32_RS02850 WP_064522057.1 679277..680536(-) (pilC) [Xanthomonas translucens pv. translucens strain XtKm9]
MSATRSAVSKEPVARTISQQVPFVWEGTDKRGVKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGSAGSKISAKD
IAFFSRQMATMMKSGVPIVGSLEIIGSGHKNPRMKKMVGQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENTEALKGKIKKALFYPAAVMAVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWWL
LLIVLVGSIVGFVFAYKRSPSMQHGMDRLILKVPIIGQIMHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=498470 ISN32_RS02850 WP_064522057.1 679277..680536(-) (pilC) [Xanthomonas translucens pv. translucens strain XtKm9]
ATGTCCGCAACTCGTAGCGCAGTATCCAAAGAACCCGTCGCACGCACTATCAGCCAGCAGGTGCCGTTCGTCTGGGAAGG
GACGGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACCTGCTGCGTGCGGAATTGCGCCGCC
AGGGCATCACCCCGTCGGTGGTCAAGCCGAAACCCAAGCCCCTGTTCGGCTCCGCCGGCAGCAAGATCAGCGCGAAGGAC
ATTGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCGGGCGTCCCCATCGTGGGATCGCTGGAAATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGGCCAGGTCCGCACCGACATCGAAGGCGGCTCGTCGCTCTATGAAG
CGATCAGCAAGCATCCGGTCCAGTTCGATGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAAGGCGCCGGTGTACTCGAA
ACCGTGCTGGAGACGGTAGCCACCTACAAAGAAAACACCGAGGCGCTGAAGGGCAAGATCAAGAAAGCCTTGTTCTATCC
GGCCGCGGTCATGGCCGTGGCGCTTCTGGTCAGCTCGATCTTGCTGGTGTGGGTGGTCCCGCAATTCGAGGATGTCTTCA
AAGGGTTTGGCGCGGAGTTACCCGCATTCACTCAGATGATCGTCGCCGCTTCACGCTTTATGGTGGCTTATTGGTGGCTC
CTGCTGATCGTGCTGGTTGGCAGCATCGTCGGCTTCGTCTTCGCCTACAAGCGCTCGCCGTCGATGCAGCACGGCATGGA
CCGGCTGATCCTGAAGGTGCCGATCATCGGCCAGATCATGCACAACAGCTCCGTGGCCCGCTTCTCGCGGACACTGGGCG
TCACCTTCCGCGCCGGCGTCCCGTTGGTGGAAGCGCTGGACATCGTCGCCGGCGCCACCGGCAACAGCGTCTACGAAAAG
GCCGTGCTGCGCATGCGCGACGACGTGTCGGTGGGCTACCCGGTCAATGTGGCGATGAAACAGGCCAACCTGTTTCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAAGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCGTTGAGCAGCCTGCTGGAACCGCTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTCGTCGGCATGTATCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.788

94.511

0.508
  pilC Legionella pneumophila strain ERS1305867

52.525

94.511

0.496
  pilC Acinetobacter baylyi ADP1

50.868

96.181

0.489
  pilC Acinetobacter baumannii D1279779

50.868

96.181

0.489
  pilG Neisseria gonorrhoeae MS11

43.216

94.988

0.411
  pilC Vibrio cholerae strain A1552

42.222

96.659

0.408
  pilG Neisseria meningitidis 44/76-A

42.714

94.988

0.406
  pilC Vibrio campbellii strain DS40M4

39.901

96.897

0.387
  pilC Thermus thermophilus HB27

38.75

95.465

0.37