Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SSUD12_RS00855 Genome accession   NC_017621
Coordinates   138257..138652 (+) Length   131 a.a.
NCBI ID   WP_014637328.1    Uniprot ID   G7SD76
Organism   Streptococcus suis D12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 133257..143652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS00825 (SSUD12_0134) pepA 133286..134347 (-) 1062 WP_014637322.1 glutamyl aminopeptidase -
  SSUD12_RS00830 (SSUD12_0135) - 135146..135430 (+) 285 WP_014637323.1 DUF4651 domain-containing protein -
  SSUD12_RS00835 (SSUD12_0136) - 135427..135747 (+) 321 WP_014637324.1 thioredoxin family protein -
  SSUD12_RS00840 (SSUD12_0137) - 135792..136748 (+) 957 WP_014637325.1 DUF1002 domain-containing protein -
  SSUD12_RS00845 (SSUD12_0138) ytpR 136767..137390 (+) 624 WP_014637326.1 YtpR family tRNA-binding protein -
  SSUD12_RS00850 (SSUD12_0139) - 137423..138202 (-) 780 WP_014637327.1 DUF2785 domain-containing protein -
  SSUD12_RS00855 (SSUD12_0140) ssbA 138257..138652 (+) 396 WP_014637328.1 single-stranded DNA-binding protein Machinery gene
  SSUD12_RS00860 (SSUD12_0141) - 139031..139285 (-) 255 WP_014637329.1 hypothetical protein -
  SSUD12_RS00865 (SSUD12_0142) groES 139483..139764 (+) 282 WP_014637330.1 co-chaperone GroES -
  SSUD12_RS00870 (SSUD12_0143) groL 139775..141397 (+) 1623 WP_014637331.1 chaperonin GroEL -
  SSUD12_RS00875 (SSUD12_0144) rpsL 141629..142042 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  SSUD12_RS00880 (SSUD12_0145) rpsG 142059..142529 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14866.76 Da        Isoelectric Point: 5.0026

>NTDB_id=49773 SSUD12_RS00855 WP_014637328.1 138257..138652(+) (ssbA) [Streptococcus suis D12]
MYNKVILIGRLTAQPELTQTPTGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=49773 SSUD12_RS00855 WP_014637328.1 138257..138652(+) (ssbA) [Streptococcus suis D12]
ATGTATAATAAAGTTATCTTAATCGGTCGCTTGACGGCCCAACCCGAACTCACTCAAACACCAACTGGCAAAAATTTGAC
TCGTGTAACAGTCGCAGTCAATCGCCGATTTAAGACTGAAAATGGTGAACGTGAAGCAGATTTTCTTAATGTTATTTTCT
GGGGCAAACTGGCGGAAACACTTGTCTCCTATGGCAGCAAGGGTAGTCTGATTTCTATTGACGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACAGAAATCTTAGGACAATCCTTCCAGTTGCTCGAAAGCCGTGCCCA
ACGTGCCATGCGTGAAAACAATACTGGTGATGACCTAGCTGACTTGGTTCTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SD76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae TIGR4

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae D39

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae R6

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus mitis SK321

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

80.916

0.382

Multiple sequence alignment