Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   SSUD9_RS00890 Genome accession   NC_017620
Coordinates   138363..138758 (+) Length   131 a.a.
NCBI ID   WP_002936524.1    Uniprot ID   -
Organism   Streptococcus suis D9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 133363..143758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD9_RS00860 (SSUD9_0146) pepA 133977..135038 (-) 1062 WP_002936538.1 glutamyl aminopeptidase -
  SSUD9_RS00865 (SSUD9_0147) - 135251..135535 (+) 285 WP_002936537.1 DUF4651 domain-containing protein -
  SSUD9_RS00870 (SSUD9_0148) - 135532..135852 (+) 321 WP_002936536.1 thioredoxin family protein -
  SSUD9_RS00875 (SSUD9_0149) - 135897..136853 (+) 957 WP_002936535.1 DUF1002 domain-containing protein -
  SSUD9_RS00880 (SSUD9_0150) ytpR 136872..137495 (+) 624 WP_002936532.1 YtpR family tRNA-binding protein -
  SSUD9_RS00885 (SSUD9_0151) - 137529..138308 (-) 780 WP_002936525.1 DUF2785 domain-containing protein -
  SSUD9_RS00890 (SSUD9_0152) ssbB 138363..138758 (+) 396 WP_002936524.1 single-stranded DNA-binding protein Machinery gene
  SSUD9_RS11445 (SSUD9_0153) - 138872..139117 (-) 246 WP_002936522.1 hypothetical protein -
  SSUD9_RS00900 (SSUD9_0154) groES 139315..139596 (+) 282 WP_002936521.1 co-chaperone GroES -
  SSUD9_RS00905 (SSUD9_0155) groL 139608..141230 (+) 1623 WP_013730081.1 chaperonin GroEL -
  SSUD9_RS00910 (SSUD9_0156) rpsL 141462..141875 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  SSUD9_RS00915 (SSUD9_0157) rpsG 141892..142362 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14876.76 Da        Isoelectric Point: 5.0026

>NTDB_id=49724 SSUD9_RS00890 WP_002936524.1 138363..138758(+) (ssbB) [Streptococcus suis D9]
MYNKVILIGRLTAQPELTQTPNGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGNKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNAGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=49724 SSUD9_RS00890 WP_002936524.1 138363..138758(+) (ssbB) [Streptococcus suis D9]
ATGTATAATAAAGTTATTTTAATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACCCCTAACGGCAAAAATCTGAC
CCGTGTTACTGTCGCAGTCAACCGCCGTTTTAAGACGGAAAATGGCGAACGTGAAGCAGATTTTCTTAATGTCATTTTCT
GGGGCAAACTGGCGGAAACGCTTGTTTCCTATGGTAATAAAGGTAGTCTAATTTCCATTGATGGTGAATTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACAGAAATCTTAGGACAATCCTTCCAGCTGCTCGAAAGTCGGGCCCA
ACGTGCTATGCGTGAAAATAATGCTGGCGATGATCTAGCTGATTTGGTCTTAGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.763
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae TIGR4

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae R6

73.282

100

0.733
  ssbB/cilA Streptococcus mitis SK321

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae D39

73.282

100

0.733
  ssbB/cilA Streptococcus mitis NCTC 12261

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae Rx1

73.282

100

0.733
  ssbB Lactococcus lactis subsp. cremoris KW2

64.286

85.496

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.113

80.916

0.389

Multiple sequence alignment