Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IOD65_RS18010 Genome accession   NZ_CP063769
Coordinates   3781419..3782645 (+) Length   408 a.a.
NCBI ID   WP_005065874.1    Uniprot ID   A0A013UWA6
Organism   Acinetobacter sp. Ac-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3776419..3787645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD65_RS17975 (IOD65_17975) rimP 3777090..3777614 (-) 525 WP_002114922.1 ribosome maturation factor RimP -
  IOD65_RS17995 (IOD65_17995) secG 3778252..3778581 (-) 330 WP_005065880.1 preprotein translocase subunit SecG -
  IOD65_RS18000 (IOD65_18000) tpiA 3778594..3779388 (-) 795 WP_005065878.1 triose-phosphate isomerase -
  IOD65_RS18005 (IOD65_18005) pilB 3779680..3781392 (+) 1713 WP_005065876.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IOD65_RS18010 (IOD65_18010) pilC 3781419..3782645 (+) 1227 WP_005065874.1 type II secretion system F family protein Machinery gene
  IOD65_RS18015 (IOD65_18015) pilD 3782645..3783505 (+) 861 WP_033849614.1 prepilin peptidase Machinery gene
  IOD65_RS18020 (IOD65_18020) coaE 3783507..3784103 (+) 597 WP_005065869.1 dephospho-CoA kinase -
  IOD65_RS18025 (IOD65_18025) - 3784100..3785014 (-) 915 WP_057062693.1 DMT family transporter -
  IOD65_RS18030 (IOD65_18030) rlmB 3785050..3785799 (-) 750 WP_005065863.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IOD65_RS18035 (IOD65_18035) - 3785902..3786228 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  IOD65_RS18040 (IOD65_18040) - 3786305..3787615 (-) 1311 WP_005065861.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45055.50 Da        Isoelectric Point: 9.8207

>NTDB_id=496680 IOD65_RS18010 WP_005065874.1 3781419..3782645(+) (pilC) [Acinetobacter sp. Ac-14]
MTIKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAIIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=496680 IOD65_RS18010 WP_005065874.1 3781419..3782645(+) (pilC) [Acinetobacter sp. Ac-14]
ATGACTATCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGCGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGTGTAACTGTCCGTAACATTCGGGAAAAGC
GTAAAAATATTCTTGAGGGTTTATTTAAGAAGAAAGTATCAACACTCGATATCACAATTTTTACTAGGCAACTTGCAACG
ATGATGAAAGCAGGTGTGCCACTGGTACAAGGCTTTGAAATTGTAGCGGAGGGTCTAGAAAACCCAGCCATGCGCGAGGT
GGTACTCGGGATTAAAGGTGAAGTTGAAGGTGGTAGTACCTTTGCTTCAGCTTTAAGAAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTCGTAGAGTCTGGCGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTACTTAAGCAGAAAATTAAGAAGGCTATGAAATATCCAGCAACGGTTATTGTCGTCGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCTGTTTTCCAAGACCTGTTTTCTTCTTTTGGTGCAGATTTACCTGCATTCA
CCCAAATGGTCGTGAACATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGGGCAATTATTGCC
GCATTTCTGGAAGCCAAGAAGCGTAGTAAAAAATTCCGTGATGGTTTAGATAAACTCACACTGAAACTACCTATCTTTGG
CGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTCCCACTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTAGCT
ACAGGCCAACAACTCCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A013UWA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.304

100

0.973
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

52.593

99.265

0.522
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

37.157

98.284

0.365