NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	IOD65_RS18015	Genome accession	NZ_CP063769
Coordinates	3782645..3783505 (+)	Length	286 a.a.
NCBI ID	WP_033849614.1	Uniprot ID	A0A013TLV1
Organism	Acinetobacter sp. Ac-14
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3777645..3788505

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IOD65_RS17995 (IOD65_17995)	secG	3778252..3778581 (-)	330	WP_005065880.1	preprotein translocase subunit SecG	-
IOD65_RS18000 (IOD65_18000)	tpiA	3778594..3779388 (-)	795	WP_005065878.1	triose-phosphate isomerase	-
IOD65_RS18005 (IOD65_18005)	pilB	3779680..3781392 (+)	1713	WP_005065876.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IOD65_RS18010 (IOD65_18010)	pilC	3781419..3782645 (+)	1227	WP_005065874.1	type II secretion system F family protein	Machinery gene
IOD65_RS18015 (IOD65_18015)	pilD	3782645..3783505 (+)	861	WP_033849614.1	prepilin peptidase	Machinery gene
IOD65_RS18020 (IOD65_18020)	coaE	3783507..3784103 (+)	597	WP_005065869.1	dephospho-CoA kinase	-
IOD65_RS18025 (IOD65_18025)	-	3784100..3785014 (-)	915	WP_057062693.1	DMT family transporter	-
IOD65_RS18030 (IOD65_18030)	rlmB	3785050..3785799 (-)	750	WP_005065863.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
IOD65_RS18035 (IOD65_18035)	-	3785902..3786228 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
IOD65_RS18040 (IOD65_18040)	-	3786305..3787615 (-)	1311	WP_005065861.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32236.69 Da Isoelectric Point: 6.8118

                                >NTDB_id=496681 IOD65_RS18015 WP_033849614.1 3782645..3783505(+) (pilD) [Acinetobacter sp. Ac-14]

MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIEHEKLTLSKPASSCPECHQP

IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWVLIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=496681 IOD65_RS18015 WP_033849614.1 3782645..3783505(+) (pilD) [Acinetobacter sp. Ac-14]

ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG

TAGTTTTTTGAATGTGGTGATTTATCGCACCCCGAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA

ATCCCGAACAACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCAGAGTGTCATCAACCG

ATCCGTTGGTATCAAAATATTCCTGTCATAAGTTGGTTGATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG

CATTCGTTATCCAGCGATTGAATTACTCACCATGCTATGTTCATTAGTCGTGGTTATGGTATTTGGCCCAACCCTACAAA

TGCTTTGGGGACTAGTGCTCACTTGGGTTCTGATTGCTTTGACATTTATAGACTTTGATACTCAGCTGCTACCCGACCGT

TTCACTCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCTATTTGGGG

ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAGGGTATGGGCTACG

GCGACTTTAAATTACTTGCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA

CTTGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCTTTTGCCTTTGGACCATATATTGCCAT

TGCGGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A013TLV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	96.853	100	0.969
pilD	Acinetobacter baumannii D1279779	96.503	100	0.965
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.768	94.755	0.5
pilD	Neisseria gonorrhoeae MS11	47.328	91.608	0.434

Detailed information NTG0496681