Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IM698_RS12155 Genome accession   NZ_CP063682
Coordinates   2754037..2755149 (-) Length   370 a.a.
NCBI ID   WP_260809582.1    Uniprot ID   -
Organism   Vibrio splendidus strain ED144     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2749037..2760149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM698_RS12125 (IM698_12115) hemF 2749576..2750493 (-) 918 WP_248373465.1 oxygen-dependent coproporphyrinogen oxidase -
  IM698_RS12130 (IM698_12120) - 2750513..2751070 (-) 558 WP_260809579.1 L-threonylcarbamoyladenylate synthase -
  IM698_RS12135 (IM698_12125) purE 2751265..2751750 (+) 486 WP_004735777.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  IM698_RS12140 (IM698_12130) - 2751756..2752886 (+) 1131 WP_260809580.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  IM698_RS12145 (IM698_12135) - 2752975..2753544 (-) 570 WP_260809581.1 type I DNA topoisomerase -
  IM698_RS12150 (IM698_12140) - 2753557..2754033 (-) 477 WP_048657837.1 DUF494 family protein -
  IM698_RS12155 (IM698_12145) dprA 2754037..2755149 (-) 1113 WP_260809582.1 DNA-processing protein DprA Machinery gene
  IM698_RS12160 (IM698_12150) - 2755146..2756237 (-) 1092 WP_260809583.1 LysM peptidoglycan-binding domain-containing protein -
  IM698_RS12165 (IM698_12155) def 2756378..2756890 (+) 513 WP_017058772.1 peptide deformylase -
  IM698_RS12170 (IM698_12160) fmt 2756928..2757893 (+) 966 WP_107899440.1 methionyl-tRNA formyltransferase -
  IM698_RS12175 (IM698_12165) rsmB 2758013..2759293 (+) 1281 WP_248388611.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40127.85 Da        Isoelectric Point: 6.8794

>NTDB_id=496228 IM698_RS12155 WP_260809582.1 2754037..2755149(-) (dprA) [Vibrio splendidus strain ED144]
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPSNIVGYSSQQLQAIGLSAKQISYLREQAPKEVEACLAWQARQPNHHII
TPNCLHYPKLLNEIASAPSVLFVKGHVEKLIEPQIAMVGSRNASIEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLADRICDNGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHSPTSRGGNSLIKAGACLVQNAQDVLIEIKSLLDWSIDQQPSLFEPTQNEGENEQLPFPQLF
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=496228 IM698_RS12155 WP_260809582.1 2754037..2755149(-) (dprA) [Vibrio splendidus strain ED144]
GTGAATGAGCAGCAACTGAGCGCTTGGCTAACTCTAAGTTTTGTTCCGCAACTGGGTGGCAAGCGCCTTTCTCGTTTGTT
GAGTATTGATTCTCCTTCCAATATTGTTGGCTACTCAAGTCAGCAGCTTCAAGCGATTGGCTTGTCAGCTAAGCAAATTT
CCTATCTAAGAGAGCAAGCCCCAAAAGAAGTTGAGGCTTGTCTCGCGTGGCAAGCAAGACAGCCCAACCATCACATTATT
ACTCCTAATTGCTTACATTATCCCAAACTGCTGAACGAGATCGCCTCTGCGCCAAGTGTTCTTTTCGTTAAAGGTCACGT
TGAAAAACTGATCGAGCCTCAAATCGCGATGGTCGGCAGTCGTAATGCCAGTATTGAAGGGCTGCAGACAGCGAAGTCCT
TCGCTAAAGAGTTTGTACAAAATGGCTTGATCGTCACGAGTGGCTTAGCGTTGGGCATTGACGGCTACGCTCATGATGGT
GCTTTGGATAAAGGAGGGGAAACTTTTGCTGTGTTGGGTTCTGGCTTGGATTCTATTTACCCTGCACGTCACCGAAACCT
AGCGGATAGGATCTGTGATAATGGCGCGCTGATTTCAGAGTTCCGACCTAGTGCTAAACCTCGACCTGAACATTTCCCTC
GCCGTAACCGTATTATAAGTGGGTTGTCGCTTGGAACTTTGGTGGTTGAGGCCGCTGAAAAGAGTGGTTCTTTGATTACG
GCTCGCTATGCCATGGAGCAAGGTCGAGAGGTGTTTGCGCTGCCCGGTTCAATTCATAGCCCAACCAGTCGCGGAGGTAA
CAGTTTAATTAAAGCTGGAGCATGTTTAGTACAAAATGCTCAAGATGTTCTGATTGAAATAAAGAGTCTGTTAGACTGGT
CTATAGATCAGCAGCCCAGTTTGTTCGAGCCTACGCAGAATGAGGGTGAAAATGAGCAATTGCCATTTCCACAGCTGTTC
GCTAACGTAGGATTAGAGGCGACACCCGTTGATATTTTGGCACAGCGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

67.751

99.73

0.676
  dprA Vibrio cholerae strain A1552

58.289

100

0.589
  dprA Glaesserella parasuis strain SC1401

47.849

100

0.481
  dprA Legionella pneumophila strain ERS1305867

45.427

88.649

0.403
  dprA Neisseria meningitidis strain C311

37.531

100

0.403
  dprA Neisseria meningitidis MC58

37.531

100

0.403
  dprA Haemophilus influenzae Rd KW20

44.012

90.27

0.397
  dprA Neisseria gonorrhoeae strain FA1090

36.456

100

0.389
  dprA Neisseria gonorrhoeae MS11

36.456

100

0.389
  dprA Acinetobacter baumannii D1279779

40.407

92.973

0.376
  dprA Acinetobacter baumannii strain A118

41.265

89.73

0.37