Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   INQ42_RS09875 Genome accession   NZ_CP063657
Coordinates   2184833..2186092 (+) Length   419 a.a.
NCBI ID   WP_194034117.1    Uniprot ID   -
Organism   Novilysobacter avium strain H23M41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2179833..2191092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ42_RS09855 (INQ42_09855) - 2180773..2181075 (+) 303 WP_194034113.1 type II toxin-antitoxin system HigB family toxin -
  INQ42_RS09860 (INQ42_09860) - 2181092..2181466 (+) 375 WP_194034114.1 type II toxin-antitoxin system HigA family antitoxin -
  INQ42_RS09865 (INQ42_09865) pilB 2181589..2183319 (+) 1731 WP_194034115.1 type IV-A pilus assembly ATPase PilB Machinery gene
  INQ42_RS09870 (INQ42_09870) - 2183428..2184576 (+) 1149 WP_194034116.1 Fic family protein -
  INQ42_RS09875 (INQ42_09875) pilC 2184833..2186092 (+) 1260 WP_194034117.1 type II secretion system F family protein Machinery gene
  INQ42_RS09880 (INQ42_09880) pilD 2186106..2186969 (+) 864 WP_193984256.1 A24 family peptidase Machinery gene
  INQ42_RS09885 (INQ42_09885) coaE 2187052..2187672 (+) 621 WP_194035847.1 dephospho-CoA kinase -
  INQ42_RS09890 (INQ42_09890) - 2187688..2188680 (-) 993 WP_194034118.1 Nudix family hydrolase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45401.00 Da        Isoelectric Point: 10.2809

>NTDB_id=496152 INQ42_RS09875 WP_194034117.1 2184833..2186092(+) (pilC) [Novilysobacter avium strain H23M41]
MSVSRTAAKKPVVAPRRAEATPVFVWEGTDKRGITMKGEQTAKNANFVRAELRRMGITPKVVKIKPKPLFSAGKKVSPQD
IAVFARQVATMMKAGVPIVGALEIIASGNKNPRMQKLVNSIRSEVESGSSLSEALGKHPVEFDLLFRNLVAAGESAGVLE
TVLDTVATYKENTEALKGKIKKAMFYPAAVVAVALIVSAILLVFVVPMFEDVFASFGAELPAFTMLIIKLSRFMVAWWWL
ILIVAVATVVAFIMTKNRSVAFQFFLDRMILKVPVVGQIIHNSAIARFARTLAVTFRAGVPLVEGLDTVGGATGNIVYEK
AVHRIRDDVAVGYSVNMAMKQVNLFPHMVVQMVAIGEEAGALDTMLLKVAEFYEQEVDNAVDALSSLLEPMIMVFLGVVV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=496152 INQ42_RS09875 WP_194034117.1 2184833..2186092(+) (pilC) [Novilysobacter avium strain H23M41]
ATGTCTGTCAGCCGCACTGCCGCCAAGAAACCCGTCGTGGCGCCACGCCGCGCCGAAGCGACGCCCGTTTTCGTGTGGGA
AGGCACCGACAAGCGCGGTATCACCATGAAGGGCGAGCAGACCGCGAAAAACGCGAACTTCGTGCGCGCCGAACTGCGCC
GGATGGGCATTACGCCCAAGGTCGTGAAGATCAAGCCCAAGCCGCTTTTCAGCGCCGGCAAGAAAGTGTCTCCGCAGGAC
ATCGCGGTGTTCGCGCGCCAGGTCGCCACGATGATGAAGGCCGGCGTGCCCATCGTCGGCGCGCTGGAGATCATCGCCAG
CGGCAACAAGAACCCCAGGATGCAGAAGCTGGTCAACTCGATCCGCTCGGAGGTCGAGAGCGGTTCGTCGCTGAGCGAGG
CGCTTGGCAAGCATCCCGTCGAGTTCGACCTGCTGTTCCGCAACCTGGTGGCAGCCGGTGAGTCTGCGGGTGTGCTGGAG
ACGGTGCTCGATACGGTGGCGACCTACAAGGAAAACACCGAGGCGCTGAAGGGCAAGATCAAGAAGGCGATGTTCTACCC
GGCGGCCGTGGTTGCCGTCGCATTGATCGTCAGCGCGATCCTGCTGGTGTTCGTGGTGCCGATGTTCGAGGACGTGTTTG
CCAGCTTCGGCGCCGAGCTACCGGCGTTCACCATGCTGATCATCAAGCTGAGCCGGTTCATGGTGGCATGGTGGTGGCTG
ATCCTGATCGTCGCGGTGGCTACCGTGGTCGCCTTCATCATGACGAAGAACCGCTCGGTCGCGTTCCAGTTCTTCCTGGA
CCGGATGATCCTGAAGGTGCCGGTGGTCGGCCAGATCATCCACAACTCCGCCATTGCACGTTTCGCGCGTACGCTGGCCG
TGACCTTCCGCGCCGGCGTGCCGTTGGTGGAAGGCTTGGATACCGTCGGCGGCGCCACCGGCAATATCGTCTACGAGAAG
GCTGTGCACCGCATCCGCGACGACGTGGCCGTCGGCTACTCGGTCAACATGGCGATGAAGCAGGTCAACCTGTTCCCGCA
CATGGTGGTGCAGATGGTGGCCATCGGCGAGGAAGCCGGCGCACTGGACACGATGCTGTTGAAGGTCGCCGAGTTCTACG
AGCAGGAAGTCGACAACGCGGTGGACGCATTGTCCAGCCTGCTGGAACCGATGATCATGGTGTTCCTGGGCGTGGTGGTG
GGCGGCATGGTGATTGCCATGTACCTGCCGATCTTCAAGCTCGGCGCCGTGGTGGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.576

96.181

0.544
  pilC Legionella pneumophila strain ERS1305867

54.156

94.749

0.513
  pilC Acinetobacter baumannii D1279779

52.206

97.375

0.508
  pilC Acinetobacter baylyi ADP1

51.716

97.375

0.504
  pilG Neisseria gonorrhoeae MS11

45.25

95.465

0.432
  pilG Neisseria meningitidis 44/76-A

45

95.465

0.43
  pilC Vibrio campbellii strain DS40M4

41.855

95.227

0.399
  pilC Vibrio cholerae strain A1552

40.806

94.749

0.387
  pilC Thermus thermophilus HB27

37.931

96.897

0.368