Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   INQ42_RS09880 Genome accession   NZ_CP063657
Coordinates   2186106..2186969 (+) Length   287 a.a.
NCBI ID   WP_193984256.1    Uniprot ID   -
Organism   Novilysobacter avium strain H23M41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2181106..2191969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ42_RS09865 (INQ42_09865) pilB 2181589..2183319 (+) 1731 WP_194034115.1 type IV-A pilus assembly ATPase PilB Machinery gene
  INQ42_RS09870 (INQ42_09870) - 2183428..2184576 (+) 1149 WP_194034116.1 Fic family protein -
  INQ42_RS09875 (INQ42_09875) pilC 2184833..2186092 (+) 1260 WP_194034117.1 type II secretion system F family protein Machinery gene
  INQ42_RS09880 (INQ42_09880) pilD 2186106..2186969 (+) 864 WP_193984256.1 A24 family peptidase Machinery gene
  INQ42_RS09885 (INQ42_09885) coaE 2187052..2187672 (+) 621 WP_194035847.1 dephospho-CoA kinase -
  INQ42_RS09890 (INQ42_09890) - 2187688..2188680 (-) 993 WP_194034118.1 Nudix family hydrolase -
  INQ42_RS09895 (INQ42_09895) secA 2188756..2191500 (-) 2745 WP_194034119.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31673.57 Da        Isoelectric Point: 8.4751

>NTDB_id=496153 INQ42_RS09880 WP_193984256.1 2186106..2186969(+) (pilD) [Novilysobacter avium strain H23M41]
MAFLDQNPEIGYPLVAGFGLLLGSFLNVVILRMPRRMEWQWQRDSREILGEPETYDPPPPGIVVERSHCPHCKHQLSWYE
NIPLFSWLALRGRCRSCKARISAQYPLVELLTAVLMVACVARFGFGWQGFGAMVFTCFLIALSGIDLRTQLLPDQLTLPL
MWLGLIAAVDNLYIAAKPAVIGAVVGYLSLWVVWWLFKQITGKEGMGHGDFKLLAAIGAWTGLAGILPTVLLSSLVGAII
GSIWLAAKGRDKATPIPFGPYLAVAGWIIFFWGEQLIGGYMRISGLA

Nucleotide


Download         Length: 864 bp        

>NTDB_id=496153 INQ42_RS09880 WP_193984256.1 2186106..2186969(+) (pilD) [Novilysobacter avium strain H23M41]
ATGGCATTCCTCGATCAGAACCCCGAAATCGGCTACCCGTTGGTCGCCGGTTTCGGCTTGCTGCTGGGCAGTTTCCTCAA
TGTGGTAATCCTGCGCATGCCGCGCCGGATGGAGTGGCAGTGGCAGCGCGACAGCCGCGAGATCCTCGGCGAGCCGGAGA
CCTACGATCCGCCGCCGCCGGGTATCGTGGTGGAACGCTCGCACTGCCCGCACTGCAAGCACCAGCTGTCCTGGTACGAG
AACATTCCGCTGTTCAGCTGGCTGGCTTTGCGTGGGCGCTGCCGGAGCTGCAAGGCGCGCATCTCGGCCCAGTACCCGCT
GGTGGAGTTGCTGACTGCGGTGCTGATGGTCGCCTGCGTCGCCCGCTTCGGCTTCGGTTGGCAAGGCTTCGGCGCGATGG
TGTTCACCTGCTTCCTGATCGCGCTGTCCGGCATCGACCTGCGGACGCAACTGCTGCCCGACCAGCTGACCCTGCCATTG
ATGTGGCTGGGGTTGATTGCGGCGGTCGACAACCTCTACATAGCCGCCAAACCGGCGGTGATCGGCGCGGTTGTCGGCTA
CCTGAGCCTGTGGGTGGTGTGGTGGCTGTTCAAGCAGATCACCGGCAAGGAAGGCATGGGCCACGGCGACTTCAAGCTGC
TGGCCGCGATTGGTGCCTGGACCGGCCTGGCAGGCATCCTGCCTACGGTGCTGCTGTCATCGCTGGTGGGCGCCATCATC
GGCTCGATCTGGCTGGCGGCGAAAGGCCGCGACAAGGCCACGCCGATTCCGTTTGGGCCGTATCTGGCCGTGGCGGGCTG
GATCATCTTCTTCTGGGGCGAGCAGTTGATCGGCGGCTATATGCGGATCTCCGGTTTGGCCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-123)

Type IV leader peptidase family (Peptidase_A24)

(133-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

47.917

100

0.481
  pilD Acinetobacter nosocomialis M2

48.582

98.258

0.477
  pilD Vibrio cholerae strain A1552

49.818

95.819

0.477
  pilD Vibrio campbellii strain DS40M4

49.064

93.031

0.456
  pilD Neisseria gonorrhoeae MS11

45.756

94.425

0.432