Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IM738_RS01655 Genome accession   NZ_CP063400
Coordinates   351363..352580 (-) Length   405 a.a.
NCBI ID   WP_236964169.1    Uniprot ID   -
Organism   Hydrogenophaga sp. SL48     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346363..357580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM738_RS01625 (IM738_01640) - 347571..348449 (+) 879 WP_236964164.1 ATP-binding protein -
  IM738_RS01630 (IM738_01645) - 348433..348933 (+) 501 WP_236964165.1 NUDIX domain-containing protein -
  IM738_RS01635 (IM738_01650) - 348902..349099 (-) 198 WP_236964166.1 DNA gyrase inhibitor YacG -
  IM738_RS01640 (IM738_01655) zapD 349108..349863 (-) 756 WP_236964167.1 cell division protein ZapD -
  IM738_RS01645 (IM738_01660) coaE 349909..350499 (-) 591 WP_236964168.1 dephospho-CoA kinase -
  IM738_RS01650 (IM738_01665) pilD 350512..351363 (-) 852 WP_236966436.1 A24 family peptidase Machinery gene
  IM738_RS01655 (IM738_01670) pilC 351363..352580 (-) 1218 WP_236964169.1 type II secretion system F family protein Machinery gene
  IM738_RS01660 (IM738_01675) pilB 352611..354344 (-) 1734 WP_236964170.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IM738_RS01670 (IM738_01685) - 354612..355541 (-) 930 WP_236964171.1 polyprenyl synthetase family protein -
  IM738_RS01675 (IM738_01690) rplU 355816..356127 (+) 312 WP_077328645.1 50S ribosomal protein L21 -
  IM738_RS01680 (IM738_01695) rpmA 356141..356398 (+) 258 WP_077328647.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44316.04 Da        Isoelectric Point: 9.5421

>NTDB_id=495426 IM738_RS01655 WP_236964169.1 351363..352580(-) (pilC) [Hydrogenophaga sp. SL48]
MATAASKTTKDFVFVWEGKDRNGKPVRGETRAVGENQVSAALRRQGIVATKVKKRRMSSGKRIKPKDIAIFTRQLATMMK
AGVPLLQAFDIVGRGNPNPSVSKLLNDIRSDVETGTSLSAAFRKNPLYFDSLYCNLVEAGEAAGILEELLDRLAVYMEKT
EAIKSKIKSALMYPVAVIIVAFVVVAVIMIFVIPSFKQVFTSFGADLPAPTLFVIAMSEFFTEYWWLIFGGLGGGIYFFM
QAWRRNEKVQMFMDRLMLRMPIFGSLVEKSVIARWTRTLSTMFAAGVPLVEALDSVGGASGNSVYAKATERIQQEVSTGT
SLTNAMSNVNLFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDDMVAGLSSLMEPIIIVILGTIIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=495426 IM738_RS01655 WP_236964169.1 351363..352580(-) (pilC) [Hydrogenophaga sp. SL48]
ATGGCAACCGCAGCTAGCAAAACCACCAAGGACTTCGTTTTCGTATGGGAAGGCAAGGACCGCAACGGCAAACCGGTCCG
GGGCGAGACGCGTGCCGTGGGTGAGAACCAGGTTTCTGCGGCGCTGCGCAGGCAAGGCATTGTCGCGACCAAGGTCAAAA
AGCGTCGCATGAGTTCGGGCAAGCGCATCAAGCCCAAGGACATCGCCATTTTCACGAGGCAGCTCGCCACCATGATGAAG
GCCGGTGTCCCGCTTCTGCAGGCATTCGATATCGTGGGACGCGGGAACCCCAATCCCAGCGTGTCCAAGCTGCTCAACGA
CATTCGGTCCGACGTGGAAACCGGCACCTCGCTGAGCGCTGCATTCAGGAAAAATCCGCTGTACTTCGACAGCCTCTATT
GCAACCTGGTGGAAGCAGGGGAAGCCGCCGGTATCCTTGAAGAATTGCTGGACAGGCTCGCTGTCTACATGGAAAAAACC
GAGGCGATCAAGTCAAAGATCAAGTCGGCGCTCATGTACCCGGTGGCTGTGATCATCGTGGCTTTTGTGGTCGTTGCGGT
GATCATGATTTTCGTGATCCCGTCTTTCAAACAGGTGTTCACCTCGTTCGGCGCCGATCTGCCGGCACCCACGCTGTTTG
TGATCGCAATGAGCGAGTTTTTCACCGAATACTGGTGGCTCATTTTTGGTGGCCTGGGTGGCGGCATCTACTTTTTCATG
CAAGCCTGGAGGCGGAATGAAAAAGTCCAAATGTTCATGGACCGATTGATGTTGAGAATGCCGATTTTTGGTTCGCTCGT
GGAAAAGTCGGTGATCGCCAGGTGGACACGCACCCTTTCCACCATGTTTGCCGCTGGTGTGCCATTGGTTGAGGCCCTGG
ATTCTGTGGGTGGGGCGTCGGGCAACTCGGTGTATGCGAAGGCCACCGAAAGAATTCAGCAAGAGGTCTCTACCGGCACC
AGCCTCACCAATGCCATGAGCAACGTCAATCTGTTTCCCTCCATGGTGCTGCAGATGTGCGCGATCGGTGAAGAGTCGGG
CTCGATCGATCACATGCTCGGCAAGGCGGCCGATTTTTACGAAGCCGAAGTCGATGACATGGTGGCCGGTCTCTCCAGCC
TGATGGAGCCCATCATCATCGTGATTCTGGGCACCATCATCGGTGGGATTGTGGTTTCGATGTATCTGCCCATCTTCAAG
CTGGGCCAGGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.208

99.753

0.541
  pilG Neisseria gonorrhoeae MS11

53.149

98.025

0.521
  pilG Neisseria meningitidis 44/76-A

52.897

98.025

0.519
  pilC Legionella pneumophila strain ERS1305867

51.759

98.272

0.509
  pilC Acinetobacter baylyi ADP1

50.369

100

0.506
  pilC Acinetobacter baumannii D1279779

48.866

98.025

0.479
  pilC Vibrio cholerae strain A1552

41.709

98.272

0.41
  pilC Vibrio campbellii strain DS40M4

39.801

99.259

0.395
  pilC Thermus thermophilus HB27

37.923

100

0.388