Detailed information NTG0495425

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IM738_RS01650
• Genome accession: NZ_CP063400
• Coordinates: 350512..351363 (-)
• Length: 283 a.a.
• NCBI ID: WP_236966436.1
• Uniprot ID: -
• Organism: Hydrogenophaga sp. SL48
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 345512..356363

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IM738_RS01620 (IM738_01635)	argJ	346290..347537 (+)	1248	WP_236964163.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
IM738_RS01625 (IM738_01640)	-	347571..348449 (+)	879	WP_236964164.1	ATP-binding protein	-
IM738_RS01630 (IM738_01645)	-	348433..348933 (+)	501	WP_236964165.1	NUDIX domain-containing protein	-
IM738_RS01635 (IM738_01650)	-	348902..349099 (-)	198	WP_236964166.1	DNA gyrase inhibitor YacG	-
IM738_RS01640 (IM738_01655)	zapD	349108..349863 (-)	756	WP_236964167.1	cell division protein ZapD	-
IM738_RS01645 (IM738_01660)	coaE	349909..350499 (-)	591	WP_236964168.1	dephospho-CoA kinase	-
IM738_RS01650 (IM738_01665)	pilD	350512..351363 (-)	852	WP_236966436.1	A24 family peptidase	Machinery gene
IM738_RS01655 (IM738_01670)	pilC	351363..352580 (-)	1218	WP_236964169.1	type II secretion system F family protein	Machinery gene
IM738_RS01660 (IM738_01675)	pilB	352611..354344 (-)	1734	WP_236964170.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IM738_RS01670 (IM738_01685)	-	354612..355541 (-)	930	WP_236964171.1	polyprenyl synthetase family protein	-
IM738_RS01675 (IM738_01690)	rplU	355816..356127 (+)	312	WP_077328645.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 283 a.a.
• Molecular weight: 30542.16 Da
• Isoelectric Point: 6.4604

>NTDB_id=495425 IM738_RS01650 WP_236966436.1 350512..351363(-) (pilD) [Hydrogenophaga sp. SL48]
MSAASLLDASVLGVLGLLIGSFLNVVIHRLPKMMEMRWAAECAELQGTAPLEEAGKTPFNLMVPRSRCPHCSHQIRWFEN
IPVASYLVLGGKCSHCRAPISPRYPLIELVNGAFFAWCGWTWGLDGTALAWCGFAAAILTLAWIDWDTTLLPDDITLPLL
WAGLCAAATRITETPLPDALWGAVAGYLSLWLVYWGFKLATGKEGMGYGDFKLFAALGAWFGWQALIPIILMASLIGAVI
GIGMKVFAQLREGGYLPFGPFLALAGLTSLLFGPQSILAVIGL

Nucleotide

• Length: 852 bp

>NTDB_id=495425 IM738_RS01650 WP_236966436.1 350512..351363(-) (pilD) [Hydrogenophaga sp. SL48]
ATCAGCGCTGCGAGCCTGCTCGACGCGTCGGTTCTCGGCGTGTTGGGGCTGTTGATTGGAAGCTTCCTGAACGTGGTCAT
CCACCGTCTGCCCAAGATGATGGAGATGCGGTGGGCGGCCGAGTGTGCCGAGCTCCAGGGCACCGCACCGCTGGAGGAGG
CGGGGAAAACTCCATTCAACTTGATGGTGCCAAGGTCTCGCTGCCCCCATTGCAGTCACCAGATTCGCTGGTTCGAGAAC
ATCCCTGTGGCCAGCTACCTGGTGTTGGGCGGCAAATGCTCCCACTGCCGCGCGCCGATCAGCCCACGTTACCCCTTGAT
CGAGCTCGTCAATGGCGCCTTCTTCGCCTGGTGTGGCTGGACCTGGGGACTGGACGGGACGGCGCTGGCATGGTGCGGCT
TTGCGGCCGCGATCCTGACCTTGGCTTGGATTGACTGGGACACGACGCTGCTGCCTGATGACATCACACTGCCATTGCTG
TGGGCGGGTTTGTGTGCAGCTGCAACACGCATCACAGAGACACCCCTCCCTGATGCCCTGTGGGGTGCTGTCGCGGGATA
CCTGTCACTGTGGCTGGTGTATTGGGGCTTCAAGCTTGCCACGGGCAAGGAAGGCATGGGCTATGGCGACTTCAAACTGT
TTGCGGCGCTGGGAGCTTGGTTTGGCTGGCAGGCGTTGATTCCCATCATTCTCATGGCATCGCTGATTGGTGCGGTCATC
GGCATTGGCATGAAGGTGTTTGCCCAGCTCCGAGAGGGCGGGTACCTGCCCTTCGGTCCCTTTCTGGCGTTGGCGGGGCT
GACGTCCCTGTTGTTCGGTCCGCAATCCATCCTGGCCGTGATCGGTCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-121)

• Type IV leader peptidase family (Peptidase_A24) (135-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.183	96.466	0.484
pilD	Vibrio campbellii strain DS40M4	50.57	92.933	0.47
pilD	Acinetobacter baumannii D1279779	45.683	98.233	0.449
pilD	Acinetobacter nosocomialis M2	45.324	98.233	0.445
pilD	Neisseria gonorrhoeae MS11	48.819	89.753	0.438