Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SPYALAB49_RS00725 Genome accession   NC_017596
Coordinates   112405..112800 (+) Length   131 a.a.
NCBI ID   WP_014635232.1    Uniprot ID   -
Organism   Streptococcus pyogenes Alab49     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 107405..117800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYALAB49_RS00695 (SPYALAB49_000136) - 108271..108579 (+) 309 WP_011017251.1 hypothetical protein -
  SPYALAB49_RS00700 (SPYALAB49_000137) proC 108662..109432 (-) 771 WP_002986527.1 pyrroline-5-carboxylate reductase -
  SPYALAB49_RS00705 (SPYALAB49_000138) pepA 109480..110547 (-) 1068 WP_014635229.1 glutamyl aminopeptidase -
  SPYALAB49_RS00710 (SPYALAB49_000139) - 111012..111296 (+) 285 WP_014635230.1 DUF4651 domain-containing protein -
  SPYALAB49_RS00715 (SPYALAB49_000140) - 111293..111610 (+) 318 WP_014635231.1 thioredoxin family protein -
  SPYALAB49_RS00720 (SPYALAB49_000141) ytpR 111628..112254 (+) 627 WP_002986511.1 YtpR family tRNA-binding protein -
  SPYALAB49_RS00725 (SPYALAB49_000142) ssbA 112405..112800 (+) 396 WP_014635232.1 single-stranded DNA-binding protein Machinery gene
  SPYALAB49_RS00730 (SPYALAB49_000143) - 113060..113701 (-) 642 WP_014635233.1 deoxynucleoside kinase -
  SPYALAB49_RS00735 (SPYALAB49_000144) dusB 113721..114698 (-) 978 WP_002986502.1 tRNA dihydrouridine synthase DusB -
  SPYALAB49_RS00740 (SPYALAB49_000145) hslO 114685..115557 (-) 873 WP_002994071.1 Hsp33 family molecular chaperone HslO -
  SPYALAB49_RS00745 (SPYALAB49_000146) nra 115683..117218 (-) 1536 WP_014635234.1 transcriptional regulator Nra -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14743.84 Da        Isoelectric Point: 8.0157

>NTDB_id=49514 SPYALAB49_RS00725 WP_014635232.1 112405..112800(+) (ssbA) [Streptococcus pyogenes Alab49]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLISIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDSVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=49514 SPYALAB49_RS00725 WP_014635232.1 112405..112800(+) (ssbA) [Streptococcus pyogenes Alab49]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCTGATTTTATTTCAGTTGTTGTTT
GGGGAAAGTTAGCTGAAACCTTGGTTTCTTATGCTAGCAAAGGTAGTTTGATATCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTCAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

63.158

87.023

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment