Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   INH39_RS17710 Genome accession   NZ_CP063361
Coordinates   3835570..3836796 (-) Length   408 a.a.
NCBI ID   WP_243488616.1    Uniprot ID   -
Organism   Massilia violaceinigra strain sipir     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3830570..3841796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INH39_RS17685 (INH39_17600) zapD 3830677..3831432 (-) 756 WP_166894242.1 cell division protein ZapD -
  INH39_RS17690 (INH39_17605) coaE 3831512..3832144 (-) 633 WP_243488612.1 dephospho-CoA kinase -
  INH39_RS17695 (INH39_17610) pilD 3832145..3833038 (-) 894 WP_243488613.1 A24 family peptidase Machinery gene
  INH39_RS17700 (INH39_17615) - 3833223..3834299 (+) 1077 WP_243488614.1 acyltransferase -
  INH39_RS17705 (INH39_17620) - 3834601..3835437 (+) 837 WP_243488615.1 DUF3800 domain-containing protein -
  INH39_RS17710 (INH39_17625) pilC 3835570..3836796 (-) 1227 WP_243488616.1 type II secretion system F family protein Machinery gene
  INH39_RS17715 (INH39_17630) pilB 3836808..3838535 (-) 1728 WP_243488617.1 type IV-A pilus assembly ATPase PilB Machinery gene
  INH39_RS17720 (INH39_17635) - 3838759..3840039 (-) 1281 WP_243488618.1 HlyC/CorC family transporter -
  INH39_RS17725 (INH39_17640) - 3840216..3840776 (-) 561 WP_243488619.1 ATP-dependent Clp protease proteolytic subunit -
  INH39_RS17730 (INH39_17645) uraH 3840858..3841211 (-) 354 WP_243488620.1 hydroxyisourate hydrolase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44385.47 Da        Isoelectric Point: 10.0629

>NTDB_id=494741 INH39_RS17710 WP_243488616.1 3835570..3836796(-) (pilC) [Massilia violaceinigra strain sipir]
MALAQTKTAAAVKESVYAWEGKDKTGKTVRGELRAGGEAVVNVTLRRQGVMVTKVKKKRYRSGKRITDKDISLFTRQLAT
MMKAGVPLLQSFDIVGKGHSNPSMSKLIMELRGDIETGTSLNNAFRKYPLYFDPLFCNLVGAGEQAGILEDLLTRLAVYK
EKTLAIKAKIRSALIYPVSILGIAFIVTAVIMIWVVPAFKTVFESFGANLPTPTVIIMDISDFFVAYWWAIFGSLFAGLY
FFFQAWQRSAKMQRFMDLTLLKAPIFGTVIRKAAIARWTRTLATMFAAGVPLVEALDSVGGAAGNALYLEATKKIQNEVS
TGTSLTVAMQNANVFPPMVTQMVAIGEESGALDSMLGKVAGFFEDEVDEAVATLASLMEPLIMVILGVIIGGLVVAMYLP
IFKLGAVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=494741 INH39_RS17710 WP_243488616.1 3835570..3836796(-) (pilC) [Massilia violaceinigra strain sipir]
ATGGCACTCGCACAAACCAAAACCGCCGCCGCCGTCAAGGAGTCGGTCTACGCCTGGGAAGGCAAGGACAAGACCGGCAA
GACCGTGCGCGGCGAACTGCGCGCCGGGGGCGAAGCCGTGGTCAACGTGACCTTGCGGCGCCAGGGTGTGATGGTGACCA
AGGTAAAGAAAAAGCGCTATCGCAGCGGCAAACGCATCACCGACAAGGATATTTCCCTGTTCACGCGCCAGCTGGCCACG
ATGATGAAGGCCGGCGTGCCGCTGCTGCAATCGTTCGATATCGTCGGCAAGGGCCACTCGAATCCATCGATGTCCAAGCT
GATCATGGAACTGCGCGGCGACATCGAAACCGGTACCAGCCTGAACAATGCTTTCCGCAAGTATCCGCTCTACTTCGACC
CGCTGTTCTGCAACCTGGTCGGCGCCGGCGAACAGGCCGGTATCCTGGAAGACTTGCTCACGCGCCTGGCGGTGTACAAG
GAAAAAACCCTGGCCATCAAGGCCAAGATCCGCTCGGCGCTGATTTATCCGGTCTCGATTCTGGGTATCGCCTTCATCGT
CACGGCGGTGATCATGATCTGGGTGGTGCCGGCATTTAAGACGGTATTCGAGAGCTTCGGCGCCAATTTGCCGACCCCGA
CCGTCATTATCATGGACATTTCGGACTTCTTTGTCGCCTACTGGTGGGCGATTTTCGGCTCCCTGTTCGCCGGCCTGTAC
TTCTTCTTCCAGGCCTGGCAACGCTCGGCCAAGATGCAGCGTTTCATGGATCTGACCCTGCTCAAGGCGCCGATTTTCGG
CACGGTGATCCGCAAGGCGGCAATCGCGCGCTGGACCCGCACCCTGGCCACCATGTTCGCGGCCGGCGTGCCGCTGGTCG
AAGCGCTCGACTCGGTCGGCGGCGCAGCCGGCAATGCCCTGTACCTGGAAGCGACCAAGAAAATCCAGAACGAGGTCAGC
ACCGGTACCAGCCTGACCGTGGCGATGCAGAACGCCAACGTGTTCCCGCCGATGGTGACCCAGATGGTGGCCATCGGCGA
AGAATCGGGCGCGCTCGATTCGATGCTGGGCAAGGTGGCCGGCTTCTTCGAAGATGAAGTCGACGAAGCGGTCGCGACCC
TGGCTTCGCTGATGGAGCCGCTGATCATGGTGATTCTGGGCGTGATCATCGGCGGCCTGGTGGTAGCCATGTACCTGCCG
ATCTTCAAACTGGGCGCGGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

51.87

98.284

0.51
  pilG Neisseria gonorrhoeae MS11

51.629

97.794

0.505
  pilG Neisseria meningitidis 44/76-A

51.128

97.794

0.5
  pilC Legionella pneumophila strain ERS1305867

51.263

97.059

0.498
  pilC Acinetobacter baumannii D1279779

50.63

97.304

0.493
  pilC Acinetobacter baylyi ADP1

49.497

97.549

0.483
  pilC Vibrio cholerae strain A1552

40.25

98.039

0.395
  pilC Vibrio campbellii strain DS40M4

39.043

97.304

0.38
  pilC Thermus thermophilus HB27

38.095

97.794

0.373