Detailed information NTG0494740

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: INH39_RS17695
• Genome accession: NZ_CP063361
• Coordinates: 3832145..3833038 (-)
• Length: 297 a.a.
• NCBI ID: WP_243488613.1
• Uniprot ID: -
• Organism: Massilia violaceinigra strain sipir
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3827145..3838038

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INH39_RS17665 (INH39_17580)	-	3827477..3827887 (+)	411	WP_243488609.1	NUDIX domain-containing protein	-
INH39_RS17670 (INH39_17585)	-	3827943..3829199 (+)	1257	WP_243488610.1	D-amino acid dehydrogenase	-
INH39_RS17675 (INH39_17590)	-	3829177..3830364 (-)	1188	WP_243488611.1	sensor histidine kinase KdpD	-
INH39_RS17680 (INH39_17595)	yacG	3830463..3830648 (-)	186	WP_167075699.1	DNA gyrase inhibitor YacG	-
INH39_RS17685 (INH39_17600)	zapD	3830677..3831432 (-)	756	WP_166894242.1	cell division protein ZapD	-
INH39_RS17690 (INH39_17605)	coaE	3831512..3832144 (-)	633	WP_243488612.1	dephospho-CoA kinase	-
INH39_RS17695 (INH39_17610)	pilD	3832145..3833038 (-)	894	WP_243488613.1	A24 family peptidase	Machinery gene
INH39_RS17700 (INH39_17615)	-	3833223..3834299 (+)	1077	WP_243488614.1	acyltransferase	-
INH39_RS17705 (INH39_17620)	-	3834601..3835437 (+)	837	WP_243488615.1	DUF3800 domain-containing protein	-
INH39_RS17710 (INH39_17625)	pilC	3835570..3836796 (-)	1227	WP_243488616.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 31822.88 Da
• Isoelectric Point: 8.1411

>NTDB_id=494740 INH39_RS17695 WP_243488613.1 3832145..3833038(-) (pilD) [Massilia violaceinigra strain sipir]
MLPETLLFAASGSLGPALAAGLFGLLVGSFLNVVIYRLPKMMERDYNDYLAGEYGCGCGTRKAHTDTFNLMVPRSACPHC
GHKIGALENIPVISYLMLGGKCKGCKAKISPRYPIIELASGLLSALLVWTFGSGYAGLATLVFLYLLIAMTFIDADTQLL
PDELTYPLLWIGLLLNTQAMFVPLQDAVIGAAVGYLALWSVATLYEKLRGQVGMGHGDFKLLAALGAWMGWSMLPSVILI
SSAVGSVVGICLIVFGGRERNVKIPFGPYLAAAGLIVMLYGKQIASVTDVVIKHWVQ

Nucleotide

• Length: 894 bp

>NTDB_id=494740 INH39_RS17695 WP_243488613.1 3832145..3833038(-) (pilD) [Massilia violaceinigra strain sipir]
ATGCTACCGGAAACACTCTTGTTCGCCGCCTCCGGCTCCCTGGGCCCGGCCCTCGCCGCCGGCCTGTTCGGCCTGCTGGT
CGGCAGCTTCCTGAATGTCGTCATCTACCGCCTCCCCAAGATGATGGAGCGCGACTATAACGATTACCTGGCGGGCGAAT
ACGGCTGCGGCTGCGGCACCCGCAAGGCGCACACCGACACCTTCAACCTGATGGTGCCGCGCTCGGCCTGCCCGCATTGC
GGACACAAGATCGGGGCCCTGGAAAATATCCCGGTCATCAGCTACCTGATGTTGGGCGGCAAGTGCAAAGGCTGCAAGGC
GAAGATTTCGCCGCGCTATCCGATCATCGAACTGGCGTCCGGCCTGCTGTCGGCCCTGCTGGTGTGGACCTTCGGCAGCG
GCTACGCCGGGCTGGCCACGCTGGTATTCCTGTACCTGCTGATCGCGATGACCTTCATCGACGCCGACACCCAGCTGCTG
CCCGACGAGCTGACCTATCCGCTGCTGTGGATCGGCCTGCTGCTCAATACGCAGGCGATGTTCGTGCCGCTGCAGGACGC
CGTCATCGGCGCCGCCGTCGGCTACCTGGCGCTGTGGTCGGTGGCGACCCTGTACGAGAAGCTGCGCGGCCAGGTCGGCA
TGGGCCACGGCGACTTCAAGCTGCTGGCCGCCCTGGGCGCCTGGATGGGCTGGAGCATGCTGCCGAGCGTGATCCTGATT
TCGTCGGCGGTCGGTTCGGTGGTCGGCATTTGCCTGATCGTGTTCGGCGGGCGCGAGCGCAACGTGAAAATTCCCTTCGG
TCCTTACCTGGCGGCTGCCGGCCTGATCGTGATGCTGTACGGCAAGCAAATCGCCAGCGTGACCGATGTCGTCATCAAGC
ACTGGGTGCAGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-131)

• Type IV leader peptidase family (Peptidase_A24) (141-250)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.66	98.99	0.492
pilD	Vibrio campbellii strain DS40M4	49.814	90.572	0.451
pilD	Neisseria gonorrhoeae MS11	47.636	92.593	0.441
pilD	Acinetobacter baumannii D1279779	45.926	90.909	0.418
pilD	Acinetobacter nosocomialis M2	45.185	90.909	0.411