Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   IM723_RS08965 Genome accession   NZ_CP063275
Coordinates   1739500..1739928 (-) Length   142 a.a.
NCBI ID   WP_011226626.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain DMST-H2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1734500..1744928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM723_RS08925 - 1734639..1735028 (-) 390 WP_164135674.1 CAAX protease -
  IM723_RS10130 - 1735156..1735494 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  IM723_RS08935 - 1735823..1736020 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  IM723_RS08940 - 1736269..1737462 (-) 1194 WP_014608740.1 acetate kinase -
  IM723_RS08945 comYH 1737518..1738474 (-) 957 WP_211836898.1 class I SAM-dependent methyltransferase Machinery gene
  IM723_RS08950 comGG 1738519..1738836 (-) 318 WP_141326604.1 competence type IV pilus minor pilin ComGG -
  IM723_RS08955 comYF 1738814..1739251 (-) 438 WP_022096897.1 competence type IV pilus minor pilin ComGF Machinery gene
  IM723_RS08960 comGE 1739235..1739528 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  IM723_RS08965 comYD 1739500..1739928 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  IM723_RS08970 comYC 1739888..1740214 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  IM723_RS08975 comYB 1740211..1741311 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  IM723_RS08980 comGA/cglA/cilD 1741193..1742134 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  IM723_RS08985 - 1742215..1742577 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15859.45 Da        Isoelectric Point: 10.3330

>NTDB_id=494189 IM723_RS08965 WP_011226626.1 1739500..1739928(-) (comYD) [Streptococcus thermophilus strain DMST-H2]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide


Download         Length: 429 bp        

>NTDB_id=494189 IM723_RS08965 WP_011226626.1 1739500..1739928(-) (comYD) [Streptococcus thermophilus strain DMST-H2]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus mutans UA140

52.672

92.254

0.486
  comYD Streptococcus mutans UA159

52.672

92.254

0.486
  comYD Streptococcus gordonii str. Challis substr. CH1

41.429

98.592

0.408
  comGD/cglD Streptococcus pneumoniae Rx1

44.094

89.437

0.394
  comGD/cglD Streptococcus pneumoniae D39

44.094

89.437

0.394
  comGD/cglD Streptococcus pneumoniae R6

44.094

89.437

0.394
  comGD/cglD Streptococcus mitis NCTC 12261

44.094

89.437

0.394
  comGD/cglD Streptococcus pneumoniae TIGR4

44.094

89.437

0.394
  comGD/cglD Streptococcus mitis SK321

43.307

89.437

0.387
  comGD Lactococcus lactis subsp. cremoris KW2

40.909

92.958

0.38