Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   IM723_RS08945 Genome accession   NZ_CP063275
Coordinates   1737518..1738474 (-) Length   318 a.a.
NCBI ID   WP_211836898.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain DMST-H2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1732518..1743474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM723_RS08915 proC 1733080..1733850 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  IM723_RS08920 - 1733880..1734542 (-) 663 WP_211836897.1 type II CAAX endopeptidase family protein -
  IM723_RS08925 - 1734639..1735028 (-) 390 WP_164135674.1 CAAX protease -
  IM723_RS10130 - 1735156..1735494 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  IM723_RS08935 - 1735823..1736020 (-) 198 WP_014727723.1 helix-turn-helix transcriptional regulator -
  IM723_RS08940 - 1736269..1737462 (-) 1194 WP_014608740.1 acetate kinase -
  IM723_RS08945 comYH 1737518..1738474 (-) 957 WP_211836898.1 class I SAM-dependent methyltransferase Machinery gene
  IM723_RS08950 comGG 1738519..1738836 (-) 318 WP_141326604.1 competence type IV pilus minor pilin ComGG -
  IM723_RS08955 comYF 1738814..1739251 (-) 438 WP_022096897.1 competence type IV pilus minor pilin ComGF Machinery gene
  IM723_RS08960 comGE 1739235..1739528 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  IM723_RS08965 comYD 1739500..1739928 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  IM723_RS08970 comYC 1739888..1740214 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  IM723_RS08975 comYB 1740211..1741311 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  IM723_RS08980 comGA/cglA/cilD 1741193..1742134 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  IM723_RS08985 - 1742215..1742577 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35856.06 Da        Isoelectric Point: 4.8624

>NTDB_id=494187 IM723_RS08945 WP_211836898.1 1737518..1738474(-) (comYH) [Streptococcus thermophilus strain DMST-H2]
MNFEAIETAFKLLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=494187 IM723_RS08945 WP_211836898.1 1737518..1738474(-) (comYH) [Streptococcus thermophilus strain DMST-H2]
ATGAATTTTGAAGCAATTGAGACAGCTTTTAAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAATATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682