Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IM723_RS08880 Genome accession   NZ_CP063275
Coordinates   1728662..1729054 (-) Length   130 a.a.
NCBI ID   WP_011227579.1    Uniprot ID   A0A2S4DWC9
Organism   Streptococcus thermophilus strain DMST-H2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1723662..1734054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM723_RS08850 dapD 1723966..1724664 (-) 699 WP_002951996.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  IM723_RS08855 - 1724750..1725504 (-) 755 Protein_1700 HAD family hydrolase -
  IM723_RS08860 - 1725619..1726452 (-) 834 WP_211836895.1 methyltransferase domain-containing protein -
  IM723_RS08870 - 1726821..1726988 (+) 168 WP_002945733.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  IM723_RS10350 - 1727041..1727277 (+) 237 WP_041827105.1 hypothetical protein -
  IM723_RS08875 tadA 1727385..1727903 (-) 519 WP_011227578.1 tRNA adenosine(34) deaminase TadA -
  IM723_RS08880 ssbA 1728662..1729054 (-) 393 WP_011227579.1 single-stranded DNA-binding protein Machinery gene
  IM723_RS08885 - 1729259..1729486 (-) 228 WP_003095911.1 sulfurtransferase TusA family protein -
  IM723_RS08890 - 1729501..1730532 (-) 1032 WP_065972612.1 YeeE/YedE family protein -
  IM723_RS08895 ytpR 1730669..1731292 (-) 624 WP_065972613.1 YtpR family tRNA-binding protein -
  IM723_RS08900 - 1731302..1731616 (-) 315 WP_002945230.1 thioredoxin family protein -
  IM723_RS08905 - 1731613..1731897 (-) 285 WP_065972614.1 DUF4651 domain-containing protein -
  IM723_RS08910 pepA 1731997..1733064 (+) 1068 WP_211836896.1 glutamyl aminopeptidase -
  IM723_RS08915 proC 1733080..1733850 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14773.70 Da        Isoelectric Point: 5.9275

>NTDB_id=494185 IM723_RS08880 WP_011227579.1 1728662..1729054(-) (ssbA) [Streptococcus thermophilus strain DMST-H2]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGELRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide


Download         Length: 393 bp        

>NTDB_id=494185 IM723_RS08880 WP_011227579.1 1728662..1729054(-) (ssbA) [Streptococcus thermophilus strain DMST-H2]
ATGTATAACAAAGTAATTTTAATTGGACGTTTAACAGCTACTCCTGAAATGGTTAAGACTGCTAGCGATAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGACTTTATTACAGTGGTTGTCT
GGGGGCGTTTGGCTGAGACCTTAGCCTCTTATGCTAGTAAGGGGAGTTTAATTTCTCTTGATGGTGAGCTTCGTACCCGT
AAGTACGATAAGGATGGCCAAACCCATTACGTTACTGAGGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S4DWC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

80.153

100

0.808
  ssbB/cilA Streptococcus pneumoniae TIGR4

75.573

100

0.762
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.762
  ssbB/cilA Streptococcus mitis SK321

74.809

100

0.754
  ssbB/cilA Streptococcus pneumoniae R6

74.809

100

0.754
  ssbB/cilA Streptococcus pneumoniae Rx1

74.809

100

0.754
  ssbB/cilA Streptococcus pneumoniae D39

74.809

100

0.754
  ssbB/cilA Streptococcus mitis NCTC 12261

73.282

100

0.738
  ssbB Lactococcus lactis subsp. cremoris KW2

61.607

86.154

0.531
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.113

81.538

0.392
  ssb Latilactobacillus sakei subsp. sakei 23K

47.17

81.538

0.385