Detailed information    

insolico Bioinformatically predicted

Overview


Name   comE/blpR   Type   Regulator
Locus tag   SSAL_RS07750 Genome accession   NC_017594
Coordinates   1677812..1678546 (-) Length   244 a.a.
NCBI ID   WP_002886762.1    Uniprot ID   A0AB37CQW6
Organism   Streptococcus salivarius 57.I     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 1672812..1683546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS07740 (Ssal_01704) - 1675832..1676398 (-) 567 WP_002886764.1 transcriptional regulator -
  SSAL_RS07745 (Ssal_01705) - 1676496..1677815 (-) 1320 WP_002886763.1 GHKL domain-containing protein -
  SSAL_RS07750 (Ssal_01706) comE/blpR 1677812..1678546 (-) 735 WP_002886762.1 response regulator transcription factor Regulator
  SSAL_RS07755 (Ssal_01707) - 1678794..1679459 (-) 666 WP_014633508.1 DUF6287 domain-containing protein -
  SSAL_RS07760 (Ssal_01708) - 1679594..1680346 (-) 753 WP_002886759.1 response regulator transcription factor -

Sequence


Protein


Download         Length: 244 a.a.        Molecular weight: 28602.00 Da        Isoelectric Point: 6.3896

>NTDB_id=49414 SSAL_RS07750 WP_002886762.1 1677812..1678546(-) (comE/blpR) [Streptococcus salivarius 57.I]
MLNIYVLEDHFIQQNRIEEVIHTILKKNNIKVGDFEVFDKPNQLLDFITERGSHQLFFLDIQIKDDTKKGLEVAKQIRKS
DPYANIVFFTTHSEYLPLTFQYQLAALDFIDKSLEGEDFQKRLESIILLTCKKIQSQNPEDAFRIENVKTVIQVPFHDIL
YFETSDIVHKVILYTKEEQIEFYGSLSQIEKSDPRLFKCHKSFLVNPENIIKLDKSTGTVYFENGGVCYVSKLKLKKLLE
RISL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=49414 SSAL_RS07750 WP_002886762.1 1677812..1678546(-) (comE/blpR) [Streptococcus salivarius 57.I]
ATGCTTAACATCTATGTTTTAGAGGATCATTTTATCCAACAAAATCGTATTGAAGAGGTTATTCATACGATTCTTAAGAA
AAATAACATTAAAGTGGGCGACTTTGAGGTTTTTGACAAACCCAATCAACTGTTAGACTTTATTACCGAGCGAGGGTCTC
ATCAGCTCTTTTTCCTAGACATTCAGATTAAAGACGATACTAAAAAAGGCTTGGAAGTTGCAAAGCAGATTCGCAAGAGT
GACCCCTATGCCAATATTGTTTTCTTCACGACTCATTCAGAGTATCTTCCCTTAACTTTTCAATACCAATTGGCAGCTCT
AGACTTTATTGATAAGTCTTTGGAGGGTGAGGACTTTCAAAAGCGTCTGGAAAGTATTATCTTATTAACCTGCAAAAAGA
TACAGAGTCAGAATCCAGAAGACGCTTTTCGGATTGAGAATGTTAAGACCGTTATTCAGGTTCCCTTTCATGATATCTTG
TACTTTGAGACCTCGGATATCGTCCACAAGGTTATCCTTTATACTAAAGAGGAGCAGATTGAGTTTTATGGCAGTCTCTC
TCAAATTGAAAAGAGTGACCCTAGACTGTTTAAATGTCATAAGTCCTTCCTAGTTAATCCAGAAAATATCATCAAATTAG
ATAAAAGTACGGGGACGGTCTATTTTGAAAATGGTGGCGTTTGCTATGTTTCAAAGTTGAAACTAAAGAAATTACTTGAG
AGAATTAGCCTATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

52.049

100

0.52

  comE/comE1 Streptococcus equinus JB1

47.28

97.951

0.463

  comE/comE2 Streptococcus equinus JB1

42.562

99.18

0.422

  comE/comE1 Streptococcus gordonii str. Challis substr. CH1

37.86

99.59

0.377

  comE/comE2 Streptococcus gordonii strain NCTC7865

37.86

99.59

0.377

  comE Streptococcus infantis strain Atu-4

37.759

98.77

0.373

  comE Streptococcus pneumoniae R6

37.344

98.77

0.369

  comE Streptococcus pneumoniae TIGR4

37.344

98.77

0.369

  comE Streptococcus pneumoniae D39

37.344

98.77

0.369

  comE Streptococcus mitis NCTC 12261

37.344

98.77

0.369

  comE Streptococcus pneumoniae Rx1

37.344

98.77

0.369

  comE Streptococcus mitis SK321

37.344

98.77

0.369


Multiple sequence alignment