Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   INR79_RS02440 Genome accession   NZ_CP063199
Coordinates   510429..511661 (-) Length   410 a.a.
NCBI ID   WP_223095884.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43132     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 505429..516661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR79_RS02400 (INR79_02400) rimM 505444..505998 (+) 555 WP_022599632.1 ribosome maturation factor RimM -
  INR79_RS02405 (INR79_02405) trmD 506026..506769 (+) 744 WP_223095875.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  INR79_RS02410 (INR79_02410) rplS 506811..507164 (+) 354 WP_004408890.1 50S ribosomal protein L19 -
  INR79_RS02415 (INR79_02415) mutT 507352..507753 (+) 402 WP_022599630.1 8-oxo-dGTP diphosphatase MutT -
  INR79_RS02420 (INR79_02420) yacG 507840..508034 (-) 195 WP_022549572.1 DNA gyrase inhibitor YacG -
  INR79_RS02425 (INR79_02425) zapD 508091..508831 (-) 741 WP_223095880.1 cell division protein ZapD -
  INR79_RS02430 (INR79_02430) coaE 508864..509469 (-) 606 WP_022599625.1 dephospho-CoA kinase -
  INR79_RS02435 (INR79_02435) pilD 509519..510388 (-) 870 WP_045966127.1 prepilin peptidase Machinery gene
  INR79_RS02440 (INR79_02440) pilC 510429..511661 (-) 1233 WP_223095884.1 type II secretion system F family protein Machinery gene
  INR79_RS02445 (INR79_02445) pilB 511671..513359 (-) 1689 WP_223095887.1 type IV-A pilus assembly ATPase PilB Machinery gene
  INR79_RS02450 (INR79_02450) pilA 513368..513778 (-) 411 WP_262415375.1 pilin Machinery gene
  INR79_RS02455 (INR79_02455) nadC 514056..514943 (-) 888 WP_223095892.1 carboxylating nicotinate-nucleotide diphosphorylase -
  INR79_RS02460 (INR79_02460) ampD 515072..515629 (+) 558 WP_223095894.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45736.88 Da        Isoelectric Point: 10.4012

>NTDB_id=493800 INR79_RS02440 WP_223095884.1 510429..511661(-) (pilC) [Vibrio sp. SCSIO 43132]
MEQSSSPKLKLHNFKWKGINSSGKKVSGQFLAFTEIEVRDKLRTQQIQIKKVRKSGISLLDKLSHKVKKRDIMVFTRQMA
TMMGTGVPIVQSLKMVSDNHNKAEMKSILSQVTKAVEAGTPISKALSTSSSHFDGFYTDLIETGEQTGNLSEVFDRIATY
QEKSEQLRSKVIKAMIYPVMVILTAIGVTFLMLKFVIPEFEKMFSGFGAELPWFTQQVLKLSHIVQNDAWKMALALIVFS
VGFKLLRKRSFKFRLRSSRWGLKFPIVGGVFSKAAIAKFSRTLATSFNAGIPILNGLKTSAKTASNLHYQVAIEQVYKDT
AAGMPIYIAMRNTEAFPEMVLQMVMIGEESGSLDDMLNKVANVYEFEVDNTVDNLGKLLEPLIIIFLGVVIGGLVVSMYL
PVFNLMSVLG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=493800 INR79_RS02440 WP_223095884.1 510429..511661(-) (pilC) [Vibrio sp. SCSIO 43132]
TTGGAACAGTCATCCTCCCCAAAACTCAAACTGCACAACTTTAAATGGAAGGGTATCAATAGCTCTGGCAAGAAAGTGTC
CGGGCAGTTTTTGGCTTTTACCGAAATAGAAGTAAGAGACAAACTTCGCACCCAACAAATTCAGATAAAAAAAGTCAGAA
AGTCAGGTATTTCACTCCTTGATAAGCTCAGCCACAAAGTCAAAAAAAGAGACATAATGGTTTTCACCAGACAAATGGCG
ACCATGATGGGAACAGGTGTGCCTATTGTTCAGTCGTTGAAGATGGTGTCAGATAATCACAACAAAGCGGAAATGAAATC
CATTTTGTCTCAAGTCACCAAAGCAGTAGAAGCTGGCACACCAATTTCTAAGGCATTAAGTACATCAAGCAGTCATTTTG
ATGGTTTCTATACTGACCTTATAGAGACAGGAGAGCAGACGGGTAACCTTTCGGAAGTTTTTGACCGTATTGCCACCTAT
CAGGAAAAAAGTGAACAGCTAAGATCCAAAGTCATCAAGGCAATGATTTACCCTGTAATGGTTATCTTAACAGCGATTGG
TGTGACATTCTTAATGCTCAAATTTGTTATTCCTGAATTTGAAAAAATGTTTTCAGGGTTTGGAGCAGAATTGCCTTGGT
TTACGCAACAAGTCCTCAAGCTCTCTCACATTGTCCAAAACGATGCCTGGAAGATGGCATTGGCGCTGATTGTTTTTAGC
GTTGGCTTTAAACTATTAAGAAAGCGTTCTTTTAAGTTCCGGTTGAGGAGCTCTCGCTGGGGACTAAAATTTCCAATTGT
GGGGGGCGTATTTAGTAAGGCAGCCATCGCCAAATTTAGCCGGACACTGGCCACCAGCTTTAACGCAGGCATTCCTATAT
TGAATGGTTTGAAAACCAGTGCCAAAACAGCGAGTAACCTGCATTATCAAGTCGCCATTGAACAGGTTTATAAAGACACA
GCAGCCGGCATGCCCATATACATTGCCATGCGAAACACCGAAGCTTTCCCGGAAATGGTATTGCAAATGGTGATGATTGG
AGAAGAATCCGGTTCGCTCGATGACATGCTCAATAAAGTCGCCAACGTCTATGAGTTTGAGGTTGATAACACAGTCGATA
ACCTTGGGAAGTTGCTTGAGCCTTTGATCATCATTTTCCTTGGGGTCGTCATTGGTGGTCTTGTCGTTTCTATGTACCTA
CCAGTATTTAACTTAATGAGTGTATTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

71.182

99.024

0.705
  pilC Vibrio campbellii strain DS40M4

68.148

98.78

0.673
  pilC Acinetobacter baylyi ADP1

42.714

97.073

0.415
  pilC Pseudomonas stutzeri DSM 10701

42.569

96.829

0.412
  pilG Neisseria gonorrhoeae MS11

41.728

98.78

0.412
  pilG Neisseria meningitidis 44/76-A

41.481

98.78

0.41
  pilC Acinetobacter baumannii D1279779

41.75

97.561

0.407
  pilC Legionella pneumophila strain ERS1305867

39.563

100

0.398