Detailed information NTG0493799

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: INR79_RS02435
• Genome accession: NZ_CP063199
• Coordinates: 509519..510388 (-)
• Length: 289 a.a.
• NCBI ID: WP_045966127.1
• Uniprot ID: -
• Organism: Vibrio sp. SCSIO 43132
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 504519..515388

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INR79_RS02395 (INR79_02395)	rpsP	505169..505417 (+)	249	WP_004408887.1	30S ribosomal protein S16	-
INR79_RS02400 (INR79_02400)	rimM	505444..505998 (+)	555	WP_022599632.1	ribosome maturation factor RimM	-
INR79_RS02405 (INR79_02405)	trmD	506026..506769 (+)	744	WP_223095875.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
INR79_RS02410 (INR79_02410)	rplS	506811..507164 (+)	354	WP_004408890.1	50S ribosomal protein L19	-
INR79_RS02415 (INR79_02415)	mutT	507352..507753 (+)	402	WP_022599630.1	8-oxo-dGTP diphosphatase MutT	-
INR79_RS02420 (INR79_02420)	yacG	507840..508034 (-)	195	WP_022549572.1	DNA gyrase inhibitor YacG	-
INR79_RS02425 (INR79_02425)	zapD	508091..508831 (-)	741	WP_223095880.1	cell division protein ZapD	-
INR79_RS02430 (INR79_02430)	coaE	508864..509469 (-)	606	WP_022599625.1	dephospho-CoA kinase	-
INR79_RS02435 (INR79_02435)	pilD	509519..510388 (-)	870	WP_045966127.1	prepilin peptidase	Machinery gene
INR79_RS02440 (INR79_02440)	pilC	510429..511661 (-)	1233	WP_223095884.1	type II secretion system F family protein	Machinery gene
INR79_RS02445 (INR79_02445)	pilB	511671..513359 (-)	1689	WP_223095887.1	type IV-A pilus assembly ATPase PilB	Machinery gene
INR79_RS02450 (INR79_02450)	pilA	513368..513778 (-)	411	WP_262415375.1	pilin	Machinery gene
INR79_RS02455 (INR79_02455)	nadC	514056..514943 (-)	888	WP_223095892.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32583.76 Da
• Isoelectric Point: 6.6865

>NTDB_id=493799 INR79_RS02435 WP_045966127.1 509519..510388(-) (pilD) [Vibrio sp. SCSIO 43132]
MEVFHYYPWLFPVMAAIFGLVIGSFLNVVIYRLPKMMENEWRQECAESFPEYKIEPPKEKLTLSVPRSSCQSCKTPIRVR
DNIPVLSWLLLKGKCHACDDSIKVRYPLIELLTAGLSFAVAWQFGFSYFSVALLFFTFVLIAATFIDLDTLLLPDQLTLP
LMWAGIALSLFEISPISLTDAIIGAMVGYLCLWSVYQLFKLATGKEGMGYGDFKLLAALGAWLGWQSLPIIILMSSLVGV
VFGVIQLRLQKKGIEQAFPFGPYLAIAGWITLMFGQDITNWYFSHFLGI

Nucleotide

• Length: 870 bp

>NTDB_id=493799 INR79_RS02435 WP_045966127.1 509519..510388(-) (pilD) [Vibrio sp. SCSIO 43132]
ATGGAAGTTTTTCACTACTACCCATGGTTATTCCCTGTGATGGCCGCAATCTTTGGATTGGTCATTGGCAGTTTCTTAAA
TGTAGTGATCTATCGGTTGCCTAAAATGATGGAAAACGAATGGAGGCAGGAGTGCGCAGAATCGTTTCCTGAGTACAAAA
TTGAACCTCCAAAGGAAAAGCTGACGTTAAGCGTCCCGCGTTCCAGTTGCCAAAGTTGTAAAACGCCAATTCGTGTTCGA
GATAACATCCCTGTATTGAGTTGGCTGCTTTTAAAAGGGAAATGCCATGCATGTGACGATAGCATCAAGGTTCGATATCC
TTTAATCGAGTTGCTCACGGCAGGGCTAAGCTTCGCGGTAGCCTGGCAATTTGGATTTAGTTACTTTTCTGTTGCTCTGC
TCTTTTTCACCTTCGTACTGATTGCTGCCACGTTTATTGACCTTGATACACTACTGTTACCCGATCAACTGACTCTGCCT
TTGATGTGGGCAGGCATTGCGTTATCTCTTTTTGAAATTAGCCCAATCTCTCTTACCGACGCCATCATTGGTGCCATGGT
GGGCTATCTCTGCTTATGGAGTGTCTACCAGTTGTTTAAGCTCGCAACAGGCAAAGAAGGGATGGGTTATGGCGACTTTA
AATTGCTGGCTGCGCTCGGAGCATGGTTAGGCTGGCAAAGCCTCCCTATTATCATCCTGATGTCCTCTCTGGTTGGCGTA
GTCTTTGGCGTTATTCAGCTCCGTCTGCAGAAGAAAGGCATCGAACAAGCCTTTCCTTTTGGTCCTTACCTTGCGATTGC
TGGGTGGATTACTCTGATGTTTGGACAAGACATCACTAACTGGTATTTCTCACATTTTCTTGGCATTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	79.239	100	0.792
pilD	Vibrio cholerae strain A1552	70.833	99.654	0.706
pilD	Acinetobacter baumannii D1279779	52.574	94.118	0.495
pilD	Acinetobacter nosocomialis M2	52.574	94.118	0.495
pilD	Neisseria gonorrhoeae MS11	45.818	95.156	0.436