Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IL982_RS12860 Genome accession   NZ_CP063049
Coordinates   2744895..2745989 (-) Length   364 a.a.
NCBI ID   WP_086367734.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain KC-Dl-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2739895..2750989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL982_RS12830 (IL982_12830) hemF 2740408..2741319 (-) 912 WP_086367738.1 oxygen-dependent coproporphyrinogen oxidase -
  IL982_RS12835 (IL982_12835) - 2741323..2741880 (-) 558 WP_086367737.1 L-threonylcarbamoyladenylate synthase -
  IL982_RS12840 (IL982_12840) purE 2742074..2742559 (+) 486 WP_005302138.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  IL982_RS12845 (IL982_12845) - 2742562..2743683 (+) 1122 WP_086367736.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  IL982_RS12850 (IL982_12850) - 2743751..2744308 (-) 558 WP_086367735.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  IL982_RS12855 (IL982_12855) - 2744419..2744892 (-) 474 WP_044178816.1 DUF494 family protein -
  IL982_RS12860 (IL982_12860) dprA 2744895..2745989 (-) 1095 WP_086367734.1 DNA-processing protein DprA Machinery gene
  IL982_RS12865 (IL982_12865) - 2745992..2747050 (-) 1059 WP_197573516.1 LysM peptidoglycan-binding domain-containing protein -
  IL982_RS12870 (IL982_12870) def 2747339..2747851 (+) 513 WP_188012715.1 peptide deformylase -
  IL982_RS12875 (IL982_12875) fmt 2747864..2748808 (+) 945 WP_197573517.1 methionyl-tRNA formyltransferase -
  IL982_RS12880 (IL982_12880) rsmB 2748947..2750224 (+) 1278 WP_086367731.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39163.26 Da        Isoelectric Point: 6.7195

>NTDB_id=492569 IL982_RS12860 WP_086367734.1 2744895..2745989(-) (dprA) [Photobacterium damselae subsp. damselae strain KC-Dl-1]
MDNIHAWLKLVAVPGLGGHRISRLLQHAMPEQIMAMDESELRSIGLTLKQVAAIKHPDNKKIDLALNWQQRPHCHIIPLV
SPLYPPLLKEISSAPPLLFVKGDPSFLAQPQIAIIGSRSASIDGREIAADFAANIVAQNYVVTSGLALGIDSQAHQGALR
HGGATIAVLGSGLEQIYPACHKSLAASIVEQGALVSEFWPQEKPRAQFFPRRNRIISGLSVGVLVVEAAQKSGSLITANY
ALEQGREVFAIPGSIYNPASRGCNALIKSGAKLVESAQDIFEEVGALTECAINHQLSQALPETENEQLPFPELLATVGSK
VIPVDVLAERSQMPVHDVMTQLLELELLGLVTALPGGYIRTRRG

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=492569 IL982_RS12860 WP_086367734.1 2744895..2745989(-) (dprA) [Photobacterium damselae subsp. damselae strain KC-Dl-1]
ATGGACAATATCCATGCTTGGCTGAAATTGGTGGCTGTTCCTGGACTCGGTGGCCACCGTATCAGTCGTTTATTACAACA
TGCAATGCCAGAGCAAATTATGGCAATGGATGAGTCTGAACTGCGAAGTATCGGGTTGACGCTAAAGCAGGTCGCCGCCA
TTAAGCATCCCGACAATAAGAAAATAGATTTGGCGCTAAATTGGCAGCAGCGTCCCCATTGTCACATTATTCCTTTAGTT
TCGCCCTTGTATCCACCTTTATTAAAGGAGATCAGCTCAGCACCTCCTTTGTTATTTGTTAAAGGTGATCCTTCTTTCTT
AGCCCAGCCTCAAATTGCCATTATTGGTAGTCGCTCAGCCAGTATTGATGGTCGAGAAATTGCCGCTGACTTTGCTGCAA
ATATTGTGGCGCAAAATTATGTGGTAACCAGTGGCTTAGCCTTAGGCATCGATAGTCAAGCTCATCAAGGAGCCCTACGT
CATGGCGGGGCAACCATTGCCGTTTTAGGTTCAGGGCTGGAGCAGATTTATCCCGCATGCCACAAATCGTTAGCTGCAAG
TATTGTTGAGCAGGGTGCTCTTGTCTCTGAGTTTTGGCCGCAAGAAAAACCACGGGCCCAATTTTTTCCACGTAGAAACC
GGATTATTAGCGGTTTATCTGTTGGAGTATTGGTTGTGGAAGCGGCTCAAAAAAGTGGATCATTAATTACGGCTAATTAT
GCTTTAGAGCAAGGCCGAGAGGTCTTTGCTATACCTGGTTCTATTTATAATCCCGCCAGCCGAGGTTGTAATGCATTGAT
AAAATCGGGTGCTAAACTTGTAGAAAGTGCTCAAGATATTTTCGAGGAGGTAGGAGCCCTAACAGAATGCGCAATTAATC
ACCAATTAAGCCAAGCTCTACCCGAGACAGAAAATGAACAATTGCCATTTCCTGAACTGTTGGCTACCGTAGGCAGCAAA
GTGATACCAGTCGATGTCTTAGCTGAGCGCAGCCAAATGCCAGTTCACGATGTCATGACGCAATTATTAGAATTAGAATT
GCTCGGATTGGTCACCGCATTACCCGGTGGTTATATCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(70-275)

DprA winged helix domain (DprA_WH)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

55.647

99.725

0.555
  dprA Vibrio cholerae strain A1552

51.323

100

0.533
  dprA Glaesserella parasuis strain SC1401

47.2

100

0.486
  dprA Legionella pneumophila strain ERS1305867

43.36

100

0.44
  dprA Haemophilus influenzae Rd KW20

46.018

93.132

0.429
  dprA Neisseria meningitidis strain C311

44.237

88.187

0.39
  dprA Neisseria meningitidis MC58

44.237

88.187

0.39
  dprA Acinetobacter baumannii strain A118

42.901

89.011

0.382
  dprA Neisseria gonorrhoeae MS11

43.26

87.637

0.379
  dprA Neisseria gonorrhoeae strain FA1090

42.633

87.637

0.374
  dprA Acinetobacter baylyi ADP1

45.27

81.319

0.368