Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IHV80_RS13390 Genome accession   NZ_CP062500
Coordinates   3046760..3047989 (+) Length   409 a.a.
NCBI ID   WP_192889370.1    Uniprot ID   -
Organism   Vibrio bathopelagicus strain Sal10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3041760..3052989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV80_RS13370 ampD 3042806..3043404 (-) 599 Protein_2593 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  IHV80_RS13375 nadC 3043488..3044378 (+) 891 WP_192889367.1 carboxylating nicotinate-nucleotide diphosphorylase -
  IHV80_RS13380 pilA 3044634..3045059 (+) 426 WP_192889368.1 pilin Machinery gene
  IHV80_RS13385 pilB 3045060..3046745 (+) 1686 WP_192889369.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IHV80_RS13390 pilC 3046760..3047989 (+) 1230 WP_192889370.1 type II secretion system F family protein Machinery gene
  IHV80_RS13395 pilD 3048058..3048927 (+) 870 WP_192889371.1 A24 family peptidase Machinery gene
  IHV80_RS13400 coaE 3048930..3049544 (+) 615 WP_192889372.1 dephospho-CoA kinase -
  IHV80_RS13405 zapD 3049571..3050311 (+) 741 WP_192889373.1 cell division protein ZapD -
  IHV80_RS13410 yacG 3050392..3050589 (+) 198 WP_004735515.1 DNA gyrase inhibitor YacG -
  IHV80_RS13415 rplS 3051042..3051395 (-) 354 WP_009847607.1 50S ribosomal protein L19 -
  IHV80_RS13420 trmD 3051455..3052195 (-) 741 WP_065110800.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  IHV80_RS13425 rimM 3052222..3052776 (-) 555 WP_009847609.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45366.33 Da        Isoelectric Point: 10.2353

>NTDB_id=490510 IHV80_RS13390 WP_192889370.1 3046760..3047989(+) (pilC) [Vibrio bathopelagicus strain Sal10]
MSSKNKQSQLKSYHWKGINSSGKKVSGQTLALTELEVREKLKDQHIQIKKIKKKSISALTRLTHRVKAKDITVLTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKSKVIKALIYPAMVVAVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLYLSHWMQAYSFYTTIGIGLLFL
SIQQLRQRSYSIRLSTSRLGLRFPILGAVITKASIAKFSRTLSTSFSSGIPILTSLKTTAKTAGNLHYEAAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=490510 IHV80_RS13390 WP_192889370.1 3046760..3047989(+) (pilC) [Vibrio bathopelagicus strain Sal10]
ATGAGTAGTAAGAACAAACAATCACAACTTAAAAGTTACCATTGGAAGGGCATAAACAGCTCCGGAAAGAAAGTATCAGG
GCAAACCTTAGCATTGACGGAATTAGAGGTACGAGAAAAGCTCAAAGATCAGCATATCCAAATAAAGAAAATCAAAAAGA
AAAGCATCTCAGCACTGACTCGTTTAACGCACCGAGTTAAGGCCAAAGACATTACCGTGTTGACTCGGCAACTCGCGACC
ATGTTAGCAACGGGTGTCCCTATCGTGCAGGCCATCAAGTTAGTCTCAGACAATCATCGCAAAGCTGAGATGAAGTCTAT
CTTGTCGCACATCTGTAAAGGTGTAGAAGCGGGCACTCCGATTTCAAAAGCCATGCGAACCGCAAGCCGTCACTTTGATG
ATCTGTATACCGACTTAGTTGCGACAGGCGAACTCTCAGGCAACCTAGCGCAAGTCTTTGAACGTTTGGCGACATACCGT
GAAAAAAGTGAGCAACTAAAATCTAAGGTTATAAAGGCTCTCATCTACCCAGCAATGGTTGTAGCGGTCGCCCTTACCGT
TTCCTACTTAATGCTAACCATGGTCATTCCTGAATTTGAATCGATGTTTTCTGGTTTCGGCGCAGACTTACCTTGGTTCA
CTCAGCAAGTGCTTTATCTTTCCCACTGGATGCAGGCCTACAGTTTCTATACTACTATTGGTATTGGTTTATTATTCCTA
TCCATTCAGCAACTGCGTCAGCGATCTTACTCGATTCGACTTTCAACCAGTCGTCTTGGTTTACGCTTCCCTATCCTGGG
TGCTGTCATCACTAAGGCATCAATTGCAAAGTTCAGCCGGACGCTATCAACCAGTTTTAGTTCTGGGATTCCCATCTTAA
CGAGCCTTAAAACAACGGCTAAAACGGCGGGTAATCTACATTATGAAGCGGCAATCATCGAGGTTCACCGTGAGACTGCC
GCAGGCATGCCGATGTACATTGCAATGCGCAATACCAATGCCTTCCCGGAGATGGTTTTGCAGATGGTGATGATTGGTGA
AGAGTCCGGAAACCTTGATGATATGCTCAATAAAGTAGCTTCCATTTACGAGTTCGAAGTAGACAACACCGTCGATAACC
TAGGTAAAATTCTCGAACCGCTGATTATTGTCTTTTTGGGTACGGTTGTTGGCGGCCTCGTTGTCGCGATGTACTTACCG
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

80.75

97.8

0.79
  pilC Vibrio campbellii strain DS40M4

73.645

99.267

0.731
  pilC Acinetobacter baylyi ADP1

41.809

100

0.418
  pilC Acinetobacter baumannii D1279779

41.975

99.022

0.416
  pilC Legionella pneumophila strain ERS1305867

41.855

97.555

0.408
  pilG Neisseria gonorrhoeae MS11

40.852

97.555

0.399
  pilG Neisseria meningitidis 44/76-A

40.602

97.555

0.396
  pilC Pseudomonas stutzeri DSM 10701

40.152

96.822

0.389