Detailed information NTG0490511

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IHV80_RS13395
• Genome accession: NZ_CP062500
• Coordinates: 3048058..3048927 (+)
• Length: 289 a.a.
• NCBI ID: WP_192889371.1
• Uniprot ID: -
• Organism: Vibrio bathopelagicus strain Sal10
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3043058..3053927

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IHV80_RS13375	nadC	3043488..3044378 (+)	891	WP_192889367.1	carboxylating nicotinate-nucleotide diphosphorylase	-
IHV80_RS13380	pilA	3044634..3045059 (+)	426	WP_192889368.1	pilin	Machinery gene
IHV80_RS13385	pilB	3045060..3046745 (+)	1686	WP_192889369.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IHV80_RS13390	pilC	3046760..3047989 (+)	1230	WP_192889370.1	type II secretion system F family protein	Machinery gene
IHV80_RS13395	pilD	3048058..3048927 (+)	870	WP_192889371.1	A24 family peptidase	Machinery gene
IHV80_RS13400	coaE	3048930..3049544 (+)	615	WP_192889372.1	dephospho-CoA kinase	-
IHV80_RS13405	zapD	3049571..3050311 (+)	741	WP_192889373.1	cell division protein ZapD	-
IHV80_RS13410	yacG	3050392..3050589 (+)	198	WP_004735515.1	DNA gyrase inhibitor YacG	-
IHV80_RS13415	rplS	3051042..3051395 (-)	354	WP_009847607.1	50S ribosomal protein L19	-
IHV80_RS13420	trmD	3051455..3052195 (-)	741	WP_065110800.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
IHV80_RS13425	rimM	3052222..3052776 (-)	555	WP_009847609.1	ribosome maturation factor RimM	-
IHV80_RS13430	rpsP	3052803..3053051 (-)	249	WP_004735508.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32566.79 Da
• Isoelectric Point: 7.6347

>NTDB_id=490511 IHV80_RS13395 WP_192889371.1 3048058..3048927(+) (pilD) [Vibrio bathopelagicus strain Sal10]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRII
DNIPVLSWLFLKGKCHTCTTPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNVSPVSLQDSVIGAIAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLLWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=490511 IHV80_RS13395 WP_192889371.1 3048058..3048927(+) (pilD) [Vibrio bathopelagicus strain Sal10]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTTCTTATCGGCAGTTTTCTCAA
CGTCGTCATACACCGTTTACCGATTATGATGGAACGAGAATGGCAACAAGAGTGCTCGGAGTATTTCTCTCAATATAAAA
TTCCAGCGCCAGAGGGAAAGTTTAATCTCAGCATTCCTCGTTCTACCTGCCCAAAATGCAAAACCCAATTAAGGATAATA
GACAATATACCAGTCTTAAGCTGGTTGTTCTTAAAGGGTAAGTGTCATACCTGTACGACTCCAATCAGCGCTCGCTACCC
TTTAGTCGAACTGCTTACCGCAATCCTTTGTACTGTTGTCGCTAGCCACTTTGGTTTCAGTTACTACGCTATCGCCCTGA
TCTTTTTCACCTTTGCGTTGATTACCGCAACCTTTATCGATCTCGATACCATGCTGCTACCTGATCAAATCACCTTACCT
TTAGTTTGGTCTGGTATCGCTTTAGCCCTGTTTAACGTCAGTCCTGTATCGCTTCAAGATTCAGTGATTGGTGCAATAGC
AGGCTACTTAGCCCTATGGTCCGTTTACTGGCTGTTCAAGCTACTGACAGGCAAAGAAGGCATGGGTTACGGCGACTTCA
AGCTTTTAGCAGCGCTTGGCGCATGGCTTGGTTGGCAGCACCTACCAATGATCATTCTTTTGTCATCGCTGGTCGGTTTA
GTTTTCGGATTGATTCAACTTCGCTTGAAACAGCAAGGCATAGATAAAGCCTTCCCATTTGGTCCCTACCTCGCGATTGC
TGGTTGGGTAAGCCTATTGTGGGGCAATGACATCATGGGTTGGTATTTCACTTCTGTGCTAGGGATTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.048	100	0.74
pilD	Vibrio cholerae strain A1552	69.444	99.654	0.692
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Acinetobacter baumannii D1279779	50.936	92.388	0.471
pilD	Neisseria gonorrhoeae MS11	48.649	89.619	0.436