Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SESEC_RS03185 Genome accession   NC_017582
Coordinates   664363..666165 (+) Length   600 a.a.
NCBI ID   WP_014622550.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus ATCC 35246     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 659363..671165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SESEC_RS03165 (SeseC_00793) queA 660415..661443 (-) 1029 WP_014622548.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SESEC_RS03170 (SeseC_00795) nagB 661712..662416 (+) 705 WP_012515299.1 glucosamine-6-phosphate deaminase -
  SESEC_RS03175 (SeseC_00796) - 662588..663304 (+) 717 WP_012515300.1 pseudouridine synthase -
  SESEC_RS03180 (SeseC_00797) - 663396..664373 (+) 978 WP_014622549.1 competence protein CoiA -
  SESEC_RS03185 (SeseC_00798) pepF 664363..666165 (+) 1803 WP_014622550.1 oligoendopeptidase F Regulator
  SESEC_RS03190 (SeseC_00799) - 666365..666922 (+) 558 WP_012678253.1 GNAT family N-acetyltransferase -
  SESEC_RS03195 (SeseC_00800) - 666912..667544 (+) 633 WP_012678252.1 HAD-IA family hydrolase -
  SESEC_RS03200 (SeseC_00803) - 667595..668233 (+) 639 WP_038674841.1 HAD family hydrolase -
  SESEC_RS03205 (SeseC_00804) - 668315..669022 (+) 708 WP_038674443.1 O-methyltransferase -
  SESEC_RS03210 (SeseC_00805) prsA 669085..670086 (+) 1002 WP_014622552.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69009.73 Da        Isoelectric Point: 4.5606

>NTDB_id=49046 SESEC_RS03185 WP_014622550.1 664363..666165(+) (pepF) [Streptococcus equi subsp. zooepidemicus ATCC 35246]
MTDNRSHLEEKYTWDLSTIFATDAAWETEADSLLAAIEAARQQAGHLLDSSSSLLDITELHLELARRVEKLYVYASMKND
QDTTVAKYQEYQAKASGIYAKFSEAFSFYEPEFMALTQETYQAFLAEKPELAVYDHFFDKLFKAREHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIAFPIVTNDKGEEVELTHGNFISLMESKDRTVRQAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYASARQAAMSANFIPEAVYDTLLETVNKHLPLLHRYLKLRQEVLGLDDLKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGQDYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLNEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSEY
LNNLYADLNEKYYGLKKEDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQEDIDHYLTYLKSGNSDYPL
EVIAKAGVDMGKGDYLEAAFKVFEERLTELEDLVARGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=49046 SESEC_RS03185 WP_014622550.1 664363..666165(+) (pepF) [Streptococcus equi subsp. zooepidemicus ATCC 35246]
ATGACAGATAATCGTAGTCATCTAGAGGAAAAGTACACTTGGGATTTAAGCACTATTTTTGCAACAGACGCAGCTTGGGA
GACAGAGGCAGATAGTCTGCTGGCAGCAATTGAGGCTGCAAGGCAGCAGGCTGGGCATTTGTTGGATTCAAGCAGCAGTC
TCTTAGATATCACAGAGCTGCATTTGGAGCTGGCTCGTCGTGTTGAAAAGCTTTATGTTTATGCCAGCATGAAAAACGAT
CAGGATACAACAGTTGCGAAGTATCAGGAATATCAGGCTAAGGCTTCTGGTATTTATGCTAAATTTAGCGAAGCCTTCTC
TTTTTATGAGCCAGAGTTTATGGCCTTGACTCAAGAGACCTATCAGGCCTTCTTAGCGGAAAAGCCAGAATTAGCAGTCT
ATGACCATTTCTTTGACAAGCTGTTTAAGGCGCGTGAGCATGTCCTTAGTCAGGCTGAGGAGGAGCTATTAGCAGGGGCA
CAAGAAATCTTTAATGGTGCTGAGGAGACCTTTAGTATCCTAGATAATGCCGACATTGCTTTTCCTATTGTGACAAATGA
TAAGGGAGAAGAGGTTGAGCTAACACATGGTAATTTCATTAGCCTAATGGAATCTAAAGACCGTACAGTGCGTCAGGCGG
CCTATGAGGCGATGTATAGCACCTATGAGCAATTCCAGCATACCTATGCTAAAACCCTGCAAACCAATGTCAAGGTGCAA
AATTATAAGGCACGTGTCCATAAGTATGCTTCAGCCCGTCAGGCAGCTATGTCAGCCAACTTTATTCCAGAGGCTGTTTA
CGATACCCTACTAGAAACCGTTAATAAGCATTTACCGCTGCTTCATCGTTACCTGAAGCTGCGTCAAGAGGTGCTTGGCT
TAGATGATCTAAAGATGTACGATGTTTATACTCCTTTATCTGAGACAGACCTTGCTATTGGTTATGATGAGGCCCTAGAA
AAAGCAGAGAAGGTTTTGGCTGTTTTTGGTCAGGATTATTCAGAGCGTGTTCATCGTGCCTTTACGGAGCGTTGGATTGA
TGTGCATGTCAATAAGGGCAAACGCTCAGGAGCTTACTCTGGTGGTTCCTATGATACCAATGCCTTTATGCTCTTAAATT
GGCAAGACACCCTTGATAACCTCTATACTTTGGTGCATGAGACAGGCCATAGCCTGCATTCAACCTTTACGCGTGAAACA
CAGCCTTACGTGTATGGAGATTACAGCATTTTCCTAGCTGAGATTGCCTCAACGACGAATGAAAACATCATGACTGAGGC
CTTGCTAAATGAGGTAGAGGACGACAAGGAGCGCTTTGCTATTTTGAACCATTACCTAGATGGTTTTCGTGGAACGGTTT
TCCGTCAAACACAGTTTGCTGAGTTTGAGCATGCTATTCATCAGGCGGATCAAAATGGCGAGGTGTTAACAAGTGAATAC
CTCAATAATCTCTATGCTGATTTAAACGAAAAATATTATGGCTTAAAAAAAGAGGACAACCATTTTATCCAGTATGAGTG
GGCTCGCATTCCGCATTTCTATTACAATTATTATGTCTACCAGTATGCAACAGGCTTTGCAGCAGCGAGCTATTTGGCTG
ATAAGATTGTTCATGGCACACAAGAGGATATTGATCATTACTTGACCTACCTCAAGTCTGGAAATTCAGATTACCCACTT
GAAGTGATTGCTAAGGCTGGGGTTGATATGGGTAAGGGTGATTACCTCGAAGCAGCCTTTAAGGTCTTTGAAGAGCGCTT
GACAGAGCTAGAGGACTTAGTGGCAAGAGGGGCTCATCTCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

73

100

0.73

Multiple sequence alignment