Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ILP77_RS00210 Genome accession   NZ_CP062467
Coordinates   28004..28429 (-) Length   141 a.a.
NCBI ID   WP_000934780.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MRSA - AMRF 5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 199..36267 28004..28429 within 0


Gene organization within MGE regions


Location: 199..36267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ILP77_RS00010 (ILP77_00010) - 199..2022 (-) 1824 WP_194085780.1 phage baseplate upper protein -
  ILP77_RS00015 (ILP77_00015) - 2022..3933 (-) 1912 Protein_2 hypothetical protein -
  ILP77_RS00020 (ILP77_00020) - 3948..5849 (-) 1902 WP_194085767.1 SGNH/GDSL hydrolase family protein -
  ILP77_RS00025 (ILP77_00025) - 5858..6804 (-) 947 Protein_4 phage tail family protein -
  ILP77_RS00030 (ILP77_00030) - 6817..10149 (-) 3333 WP_194085768.1 phage tail protein -
  ILP77_RS00035 (ILP77_00035) - 10166..10510 (-) 345 WP_000105584.1 hypothetical protein -
  ILP77_RS00040 (ILP77_00040) - 10540..10905 (-) 366 WP_001100161.1 tail assembly chaperone -
  ILP77_RS00045 (ILP77_00045) - 10968..11546 (-) 579 Protein_8 phage major tail protein, TP901-1 family -
  ILP77_RS00050 (ILP77_00050) - 11565..11948 (-) 384 WP_000188652.1 hypothetical protein -
  ILP77_RS00055 (ILP77_00055) - 11960..12305 (-) 346 Protein_10 HK97-gp10 family putative phage morphogenesis protein -
  ILP77_RS00060 (ILP77_00060) - 12305..12607 (-) 303 WP_176325151.1 hypothetical protein -
  ILP77_RS00065 (ILP77_00065) - 12604..12936 (-) 333 WP_000208960.1 phage head-tail connector protein -
  ILP77_RS00070 (ILP77_00070) - 12945..13232 (-) 288 WP_061821932.1 hypothetical protein -
  ILP77_RS00075 (ILP77_00075) - 13254..14225 (-) 972 Protein_14 phage major capsid protein -
  ILP77_RS00080 (ILP77_00080) - 14239..14654 (-) 416 Protein_15 DUF4355 domain-containing protein -
  ILP77_RS14970 - 14663..14851 (-) 189 WP_416222487.1 hypothetical protein -
  ILP77_RS00085 (ILP77_00085) - 14986..15156 (-) 171 WP_000072207.1 hypothetical protein -
  ILP77_RS00090 (ILP77_00090) - 15229..16224 (-) 996 Protein_18 minor capsid protein -
  ILP77_RS00095 (ILP77_00095) - 16231..17766 (-) 1536 WP_017804566.1 phage portal protein -
  ILP77_RS00100 (ILP77_00100) - 17777..19054 (-) 1278 WP_000169945.1 PBSX family phage terminase large subunit -
  ILP77_RS00105 (ILP77_00105) - 19041..19481 (-) 441 WP_001566315.1 terminase small subunit -
  ILP77_RS00110 (ILP77_00110) - 19668..20090 (-) 423 WP_000162696.1 RinA family phage transcriptional activator -
  ILP77_RS00115 (ILP77_00115) - 20114..20260 (-) 147 WP_000990005.1 hypothetical protein -
  ILP77_RS00120 (ILP77_00120) rinB 20261..20434 (-) 174 WP_000595257.1 transcriptional activator RinB -
  ILP77_RS00125 (ILP77_00125) - 20431..20817 (-) 387 WP_000592207.1 hypothetical protein -
  ILP77_RS00130 (ILP77_00130) - 20814..21020 (-) 207 WP_000195803.1 DUF1381 domain-containing protein -
  ILP77_RS00135 (ILP77_00135) - 21279..21563 (-) 285 WP_000154474.1 hypothetical protein -
  ILP77_RS00140 (ILP77_00140) - 21600..22109 (-) 510 WP_017804563.1 dUTPase -
  ILP77_RS00145 (ILP77_00145) - 22102..22350 (-) 249 WP_001065083.1 DUF1024 family protein -
  ILP77_RS00150 (ILP77_00150) - 22343..22570 (-) 228 Protein_30 hypothetical protein -
  ILP77_RS14910 (ILP77_00155) - 22641..23067 (-) 427 Protein_31 YopX family protein -
  ILP77_RS00160 (ILP77_00160) - 23132..23375 (-) 244 Protein_32 SAV1978 family virulence-associated passenger protein -
  ILP77_RS00165 (ILP77_00165) - 23379..23739 (-) 361 Protein_33 SA1788 family PVL leukocidin-associated protein -
  ILP77_RS00170 (ILP77_00170) - 23740..23925 (-) 186 WP_046472855.1 DUF3113 family protein -
  ILP77_RS00175 (ILP77_00175) - 23930..24334 (-) 405 WP_194085781.1 DUF1064 domain-containing protein -
  ILP77_RS00180 (ILP77_00180) - 24344..24565 (-) 222 WP_001123695.1 DUF3269 family protein -
  ILP77_RS00185 (ILP77_00185) - 24578..24736 (-) 159 WP_000256594.1 hypothetical protein -
  ILP77_RS00190 (ILP77_00190) - 24730..25508 (-) 779 Protein_38 ATP-binding protein -
  ILP77_RS00195 (ILP77_00195) - 25518..26288 (-) 771 WP_000190224.1 conserved phage C-terminal domain-containing protein -
  ILP77_RS00200 (ILP77_00200) - 26353..27210 (+) 858 WP_000371250.1 DUF4393 domain-containing protein -
  ILP77_RS00205 (ILP77_00205) - 27316..27990 (-) 675 WP_194085782.1 putative HNHc nuclease -
  ILP77_RS00210 (ILP77_00210) ssbA 28004..28429 (-) 426 WP_000934780.1 single-stranded DNA-binding protein Machinery gene
  ILP77_RS00215 (ILP77_00215) - 28429..29052 (-) 624 WP_000139724.1 DUF1071 domain-containing protein -
  ILP77_RS00220 (ILP77_00220) - 29045..29266 (-) 222 WP_000815401.1 DUF2483 family protein -
  ILP77_RS00225 (ILP77_00225) - 29276..29536 (-) 261 WP_048657592.1 DUF1108 family protein -
  ILP77_RS00230 (ILP77_00230) - 29628..29789 (-) 162 WP_000066019.1 DUF1270 family protein -
  ILP77_RS00235 (ILP77_00235) - 29782..30003 (-) 222 WP_000977381.1 hypothetical protein -
  ILP77_RS00240 (ILP77_00240) - 30017..30466 (-) 450 WP_000993183.1 hypothetical protein -
  ILP77_RS00245 (ILP77_00245) tscA 30506..30730 (-) 225 WP_023604832.1 type II toxin-antitoxin system antitoxin TscA -
  ILP77_RS00250 (ILP77_00250) - 30731..31522 (-) 792 WP_001148578.1 phage antirepressor -
  ILP77_RS00255 (ILP77_00255) - 31538..31792 (-) 255 WP_001106628.1 helix-turn-helix domain-containing protein -
  ILP77_RS00260 (ILP77_00260) - 31983..32621 (+) 639 WP_000874711.1 XRE family transcriptional regulator -
  ILP77_RS00265 (ILP77_00265) - 32672..33172 (+) 501 WP_000896616.1 hypothetical protein -
  ILP77_RS00270 (ILP77_00270) - 33176..33691 (+) 516 WP_000826266.1 hypothetical protein -
  ILP77_RS00275 (ILP77_00275) - 33753..34802 (+) 1050 WP_001145728.1 tyrosine-type recombinase/integrase -
  ILP77_RS00280 (ILP77_00280) sufB 34870..36267 (-) 1398 WP_001074405.1 Fe-S cluster assembly protein SufB -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15847.32 Da        Isoelectric Point: 4.6952

>NTDB_id=490223 ILP77_RS00210 WP_000934780.1 28004..28429(-) (ssbA) [Staphylococcus aureus strain MRSA - AMRF 5]
MLNRTVLVGRLTKDPEYRTAPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKVGQRVFVTEVVADSVQFLEPKNSNQQQNDNYQQQGQAQTGNNPFDNTEEDFSDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=490223 ILP77_RS00210 WP_000934780.1 28004..28429(-) (ssbA) [Staphylococcus aureus strain MRSA - AMRF 5]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAGCGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGTCGGGCAACGTGTGTTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAGCAACCAACAACAAAATGACAATTATCAACAACAAGGACAAGCTCAAACTGGTAATAATCCGTTTGACAATACTGAAG
AAGATTTTTCAGACCTCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

80.374

75.887

0.61
  ssb Latilactobacillus sakei subsp. sakei 23K

52.632

100

0.567
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

75.177

0.433
  ssbB/cilA Streptococcus mitis NCTC 12261

44.068

83.688

0.369
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.068

83.688

0.369
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.217

81.56

0.369
  ssbA Streptococcus mutans UA159

44.348

81.56

0.362
  ssbB/cilA Streptococcus mitis SK321

43.22

83.688

0.362
  ssbB/cilA Streptococcus pneumoniae Rx1

43.22

83.688

0.362
  ssbB/cilA Streptococcus pneumoniae D39

43.22

83.688

0.362
  ssbB/cilA Streptococcus pneumoniae R6

43.22

83.688

0.362