Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IF693_RS13450 Genome accession   NZ_CP062421
Coordinates   2722395..2722823 (+) Length   142 a.a.
NCBI ID   WP_000934783.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_AN_003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2706727..2730555 2722395..2722823 within 0


Gene organization within MGE regions


Location: 2706727..2730555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF693_RS13325 (IF693_13285) - 2706727..2707170 (+) 444 WP_000361985.1 hypothetical protein -
  IF693_RS13330 (IF693_13290) - 2707893..2709116 (-) 1224 WP_000206642.1 ArgE/DapE family deacylase -
  IF693_RS13335 (IF693_13295) lukH 2709552..2710607 (+) 1056 WP_000791418.1 bi-component leukocidin LukGH subunit H -
  IF693_RS13340 (IF693_13300) lukG 2710629..2711645 (+) 1017 WP_000595393.1 bi-component leukocidin LukGH subunit G -
  IF693_RS13345 (IF693_13305) sph 2711883..2712713 (-) 831 Protein_2590 sphingomyelin phosphodiesterase -
  IF693_RS13350 (IF693_13310) - 2712764..2713801 (-) 1038 WP_000857180.1 site-specific integrase -
  IF693_RS13355 (IF693_13315) - 2713864..2714106 (-) 243 WP_000427213.1 hypothetical protein -
  IF693_RS13360 (IF693_13320) - 2714117..2715100 (-) 984 WP_001558608.1 glycosyltransferase family 2 protein -
  IF693_RS13365 (IF693_13325) - 2715200..2715382 (-) 183 WP_000694772.1 hypothetical protein -
  IF693_RS13370 (IF693_13330) - 2715586..2715927 (-) 342 WP_000591749.1 hypothetical protein -
  IF693_RS13375 (IF693_13335) - 2715933..2716865 (-) 933 WP_000759682.1 exonuclease domain-containing protein -
  IF693_RS13380 (IF693_13340) - 2716881..2717594 (-) 714 WP_001031454.1 XRE family transcriptional regulator -
  IF693_RS13385 (IF693_13345) - 2717557..2717731 (+) 175 Protein_2598 transcriptional regulator -
  IF693_RS13390 (IF693_13350) - 2717728..2717991 (+) 264 WP_000854072.1 helix-turn-helix transcriptional regulator -
  IF693_RS13395 (IF693_13355) - 2718007..2718222 (+) 216 WP_001025404.1 MW1434 family type I TA system toxin -
  IF693_RS13400 (IF693_13360) - 2718211..2718540 (-) 330 WP_000128909.1 hypothetical protein -
  IF693_RS13405 (IF693_13365) - 2718591..2719343 (+) 753 WP_001148605.1 phage antirepressor KilAC domain-containing protein -
  IF693_RS13410 (IF693_13370) - 2719359..2719556 (+) 198 WP_001148856.1 hypothetical protein -
  IF693_RS13415 (IF693_13375) - 2719587..2719727 (+) 141 WP_000939496.1 hypothetical protein -
  IF693_RS13420 (IF693_13380) - 2719742..2720374 (-) 633 WP_000275058.1 hypothetical protein -
  IF693_RS13425 (IF693_13385) - 2720433..2720753 (+) 321 WP_001120197.1 DUF771 domain-containing protein -
  IF693_RS13430 (IF693_13390) - 2720750..2720911 (+) 162 WP_000066020.1 DUF1270 domain-containing protein -
  IF693_RS13435 (IF693_13395) - 2721003..2721263 (+) 261 WP_031807830.1 DUF1108 family protein -
  IF693_RS13440 (IF693_13400) - 2721278..2721757 (+) 480 WP_000002516.1 siphovirus Gp157 family protein -
  IF693_RS13445 (IF693_13405) - 2721757..2722395 (+) 639 WP_001043071.1 ERF family protein -
  IF693_RS13450 (IF693_13410) ssbA 2722395..2722823 (+) 429 WP_000934783.1 single-stranded DNA-binding protein Machinery gene
  IF693_RS13455 (IF693_13415) - 2722837..2723511 (+) 675 WP_015977703.1 putative HNHc nuclease -
  IF693_RS13460 (IF693_13420) - 2723617..2724474 (-) 858 WP_000371250.1 DUF4393 domain-containing protein -
  IF693_RS13465 (IF693_13425) - 2724539..2725309 (+) 771 WP_000190224.1 conserved phage C-terminal domain-containing protein -
  IF693_RS13470 (IF693_13430) - 2725319..2726098 (+) 780 WP_000803062.1 ATP-binding protein -
  IF693_RS13475 (IF693_13435) - 2726092..2726250 (+) 159 WP_000256589.1 hypothetical protein -
  IF693_RS13480 (IF693_13440) - 2726263..2726484 (+) 222 WP_001123674.1 DUF3269 family protein -
  IF693_RS13485 (IF693_13445) - 2726495..2726899 (+) 405 WP_000049804.1 DUF1064 domain-containing protein -
  IF693_RS13490 (IF693_13450) - 2726904..2727089 (+) 186 WP_001187234.1 DUF3113 family protein -
  IF693_RS13495 (IF693_13455) - 2727090..2727461 (+) 372 WP_064130043.1 SA1788 family PVL leukocidin-associated protein -
  IF693_RS13500 (IF693_13460) - 2727461..2727718 (+) 258 WP_000111491.1 DUF3310 domain-containing protein -
  IF693_RS13505 (IF693_13465) - 2727715..2727963 (+) 249 WP_000178987.1 SAV1978 family virulence-associated passenger protein -
  IF693_RS13510 (IF693_13470) - 2727978..2728226 (+) 249 WP_064289597.1 DUF1024 family protein -
  IF693_RS13515 (IF693_13475) - 2728219..2728749 (+) 531 WP_000185662.1 dUTPase -
  IF693_RS13520 (IF693_13480) - 2728786..2729031 (+) 246 WP_001282074.1 hypothetical protein -
  IF693_RS13525 (IF693_13485) - 2729028..2729234 (+) 207 WP_000195784.1 DUF1381 domain-containing protein -
  IF693_RS13530 (IF693_13490) - 2729231..2729380 (+) 150 WP_000595265.1 transcriptional activator RinB -
  IF693_RS13535 (IF693_13495) - 2729380..2729580 (+) 201 WP_001557462.1 DUF1514 family protein -
  IF693_RS13540 (IF693_13500) - 2729608..2730024 (+) 417 WP_000590122.1 hypothetical protein -
  IF693_RS13545 (IF693_13505) - 2730256..2730555 (+) 300 WP_000988332.1 HNH endonuclease -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16047.61 Da        Isoelectric Point: 5.8724

>NTDB_id=490140 IF693_RS13450 WP_000934783.1 2722395..2722823(+) (ssbA) [Staphylococcus aureus strain NAS_AN_003]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAIIDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=490140 IF693_RS13450 WP_000934783.1 2722395..2722823(+) (ssbA) [Staphylococcus aureus strain NAS_AN_003]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTATTGATGATGACTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.721

100

0.711
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

74.648

0.437
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.657

100

0.43
  ssbA Streptococcus mutans UA159

46.957

80.986

0.38
  ssbB/cilA Streptococcus mitis NCTC 12261

45.763

83.099

0.38
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.763

83.099

0.38
  ssbB/cilA Streptococcus pneumoniae Rx1

44.915

83.099

0.373
  ssbB/cilA Streptococcus pneumoniae D39

44.915

83.099

0.373
  ssbB/cilA Streptococcus pneumoniae R6

44.915

83.099

0.373
  ssbB/cilA Streptococcus mitis SK321

44.915

83.099

0.373