Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IF728_RS05890 Genome accession   NZ_CP062411
Coordinates   1171920..1172348 (-) Length   142 a.a.
NCBI ID   WP_000934385.1    Uniprot ID   A0A2K0CLZ8
Organism   Staphylococcus aureus strain NAS_AN_204     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1154872..1180238 1171920..1172348 within 0


Gene organization within MGE regions


Location: 1154872..1180238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF728_RS05700 (IF728_05680) - 1154872..1155216 (-) 345 WP_000105584.1 hypothetical protein -
  IF728_RS05705 (IF728_05685) - 1155246..1155611 (-) 366 WP_001100161.1 tail assembly chaperone -
  IF728_RS05710 (IF728_05690) - 1155673..1156254 (-) 582 WP_000002577.1 phage major tail protein, TP901-1 family -
  IF728_RS05715 (IF728_05695) - 1156273..1156656 (-) 384 WP_000188643.1 hypothetical protein -
  IF728_RS05720 (IF728_05700) - 1156668..1157015 (-) 348 WP_001017815.1 HK97-gp10 family putative phage morphogenesis protein -
  IF728_RS05725 (IF728_05705) - 1157015..1157317 (-) 303 WP_001268312.1 hypothetical protein -
  IF728_RS05730 (IF728_05710) - 1157314..1157646 (-) 333 WP_000208960.1 phage head-tail connector protein -
  IF728_RS05735 (IF728_05715) - 1157655..1157942 (-) 288 WP_001114086.1 hypothetical protein -
  IF728_RS05740 (IF728_05720) - 1157964..1158938 (-) 975 WP_000438511.1 phage major capsid protein -
  IF728_RS05745 (IF728_05725) - 1158952..1159572 (-) 621 WP_000392151.1 DUF4355 domain-containing protein -
  IF728_RS05750 - 1159560..1159653 (-) 94 Protein_1108 hypothetical protein -
  IF728_RS05755 (IF728_05730) - 1159681..1159851 (-) 171 WP_000072208.1 hypothetical protein -
  IF728_RS05760 (IF728_05735) - 1159924..1160919 (-) 996 WP_001133044.1 minor capsid protein -
  IF728_RS05765 (IF728_05740) - 1160926..1162464 (-) 1539 WP_000909970.1 phage portal protein -
  IF728_RS05770 (IF728_05745) - 1162475..1163770 (-) 1296 WP_000273011.1 PBSX family phage terminase large subunit -
  IF728_RS05775 (IF728_05750) - 1163773..1164267 (-) 495 WP_001038244.1 terminase small subunit -
  IF728_RS05780 (IF728_05755) - 1164455..1164877 (-) 423 WP_000162701.1 RinA family phage transcriptional activator -
  IF728_RS05785 (IF728_05760) - 1164946..1165047 (-) 102 Protein_1115 hypothetical protein -
  IF728_RS05790 (IF728_05765) - 1165048..1165221 (-) 174 WP_001657250.1 transcriptional activator RinB -
  IF728_RS05795 (IF728_05770) - 1165214..1165417 (-) 204 WP_001072794.1 hypothetical protein -
  IF728_RS05800 (IF728_05775) - 1165414..1165608 (-) 195 WP_000132920.1 hypothetical protein -
  IF728_RS05805 (IF728_05780) - 1165605..1165811 (-) 207 WP_000195785.1 DUF1381 domain-containing protein -
  IF728_RS05810 (IF728_05785) - 1165848..1166384 (-) 537 WP_001657251.1 dUTP diphosphatase -
  IF728_RS05815 (IF728_05790) - 1166377..1166547 (-) 171 WP_000714403.1 hypothetical protein -
  IF728_RS05820 (IF728_05795) - 1166534..1166788 (-) 255 WP_001065097.1 DUF1024 family protein -
  IF728_RS05825 (IF728_05800) - 1166781..1167152 (-) 372 WP_001557190.1 hypothetical protein -
  IF728_RS05830 (IF728_05805) - 1167161..1167403 (-) 243 WP_001562543.1 SAV1978 family virulence-associated passenger protein -
  IF728_RS05835 (IF728_05810) - 1167407..1167763 (-) 357 WP_016170777.1 SA1788 family PVL leukocidin-associated protein -
  IF728_RS05840 (IF728_05815) - 1167891..1168196 (-) 306 WP_000101252.1 hypothetical protein -
  IF728_RS05845 (IF728_05820) - 1168197..1168382 (-) 186 WP_001187243.1 DUF3113 family protein -
  IF728_RS05850 (IF728_05825) - 1168387..1168791 (-) 405 WP_000049794.1 DUF1064 domain-containing protein -
  IF728_RS05855 (IF728_05830) - 1168801..1169022 (-) 222 WP_001123695.1 DUF3269 family protein -
  IF728_RS05860 (IF728_05835) - 1169035..1169193 (-) 159 WP_000256589.1 hypothetical protein -
  IF728_RS05865 (IF728_05840) - 1169187..1169966 (-) 780 WP_000803062.1 ATP-binding protein -
  IF728_RS05870 (IF728_05845) - 1169976..1170746 (-) 771 WP_000190254.1 conserved phage C-terminal domain-containing protein -
  IF728_RS05875 (IF728_05850) - 1170812..1171093 (+) 282 WP_000414755.1 hypothetical protein -
  IF728_RS05880 (IF728_05855) - 1171086..1171235 (-) 150 WP_001081076.1 hypothetical protein -
  IF728_RS05885 (IF728_05860) - 1171232..1171906 (-) 675 WP_240053162.1 putative HNHc nuclease -
  IF728_RS05890 (IF728_05865) ssbA 1171920..1172348 (-) 429 WP_000934385.1 single-stranded DNA-binding protein Machinery gene
  IF728_RS05895 (IF728_05870) - 1172348..1172971 (-) 624 WP_000139720.1 DUF1071 domain-containing protein -
  IF728_RS05900 (IF728_05875) - 1172964..1173185 (-) 222 WP_000815402.1 DUF2483 family protein -
  IF728_RS05905 (IF728_05880) - 1173195..1173455 (-) 261 WP_000291089.1 DUF1108 family protein -
  IF728_RS05910 (IF728_05885) - 1173547..1173708 (-) 162 WP_000048126.1 DUF1270 family protein -
  IF728_RS05915 (IF728_05890) - 1173701..1173922 (-) 222 WP_000977380.1 hypothetical protein -
  IF728_RS05920 (IF728_05895) - 1173993..1174550 (+) 558 WP_000388992.1 hypothetical protein -
  IF728_RS05925 (IF728_05900) - 1174571..1174714 (-) 144 WP_000939503.1 hypothetical protein -
  IF728_RS05930 (IF728_05905) - 1174745..1174939 (-) 195 WP_001148854.1 hypothetical protein -
  IF728_RS05935 (IF728_05910) - 1174956..1175720 (-) 765 WP_001002759.1 phage antirepressor Ant -
  IF728_RS05940 (IF728_05915) - 1175720..1175914 (-) 195 WP_000108122.1 helix-turn-helix transcriptional regulator -
  IF728_RS05945 (IF728_05920) - 1176177..1176509 (+) 333 WP_001055143.1 helix-turn-helix transcriptional regulator -
  IF728_RS05950 (IF728_05925) - 1176526..1177200 (+) 675 WP_000775187.1 ImmA/IrrE family metallo-endopeptidase -
  IF728_RS05955 (IF728_05930) - 1177228..1177953 (+) 726 WP_000661437.1 PH domain-containing protein -
  IF728_RS05960 (IF728_05935) - 1177985..1178917 (+) 933 WP_000392186.1 hypothetical protein -
  IF728_RS05965 (IF728_05940) - 1178897..1179076 (-) 180 WP_000337826.1 hypothetical protein -
  IF728_RS05970 (IF728_05945) - 1179189..1180238 (+) 1050 WP_001145726.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15872.58 Da        Isoelectric Point: 8.4825

>NTDB_id=489706 IF728_RS05890 WP_000934385.1 1171920..1172348(-) (ssbA) [Staphylococcus aureus strain NAS_AN_204]
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=489706 IF728_RS05890 WP_000934385.1 1171920..1172348(-) (ssbA) [Staphylococcus aureus strain NAS_AN_204]
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K0CLZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.704
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

74.648

0.437
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.958

100

0.423
  ssbA Streptococcus mutans UA159

40.845

100

0.408
  ssbB/cilA Streptococcus mitis NCTC 12261

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae Rx1

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae D39

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae R6

39.437

100

0.394
  ssbB/cilA Streptococcus mitis SK321

39.437

100

0.394