Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IF705_RS13755 Genome accession   NZ_CP062378
Coordinates   2765287..2765715 (+) Length   142 a.a.
NCBI ID   WP_000934385.1    Uniprot ID   A0A2K0CLZ8
Organism   Staphylococcus aureus strain NAS_AN_079     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2756125..2773526 2765287..2765715 within 0


Gene organization within MGE regions


Location: 2756125..2773526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF705_RS13650 (IF705_13590) - 2756125..2757330 (-) 1206 WP_031924628.1 tyrosine-type recombinase/integrase -
  IF705_RS13655 (IF705_13595) - 2757456..2758070 (+) 615 WP_000191459.1 hypothetical protein -
  IF705_RS13660 (IF705_13600) - 2758067..2758213 (-) 147 WP_001013104.1 hypothetical protein -
  IF705_RS13665 (IF705_13605) - 2758249..2758431 (-) 183 WP_000705240.1 hypothetical protein -
  IF705_RS13670 (IF705_13610) - 2758502..2759272 (-) 771 WP_015986176.1 S24 family peptidase -
  IF705_RS13675 (IF705_13615) - 2759431..2759655 (+) 225 WP_000338186.1 DUF739 family protein -
  IF705_RS13680 (IF705_13620) - 2759673..2760116 (+) 444 WP_000435360.1 hypothetical protein -
  IF705_RS13685 (IF705_13625) - 2760131..2760271 (+) 141 WP_000939495.1 hypothetical protein -
  IF705_RS13690 (IF705_13630) - 2760264..2760473 (-) 210 WP_000772137.1 hypothetical protein -
  IF705_RS13695 (IF705_13635) - 2760530..2761285 (+) 756 WP_031879807.1 phage antirepressor KilAC domain-containing protein -
  IF705_RS13700 (IF705_13640) - 2761300..2761608 (+) 309 WP_001153965.1 hypothetical protein -
  IF705_RS13705 (IF705_13645) - 2761765..2762562 (+) 798 WP_001148572.1 phage antirepressor Ant -
  IF705_RS13710 (IF705_13650) - 2762578..2762772 (+) 195 WP_001148853.1 hypothetical protein -
  IF705_RS13715 (IF705_13655) - 2762767..2763123 (-) 357 WP_000768245.1 DUF2513 domain-containing protein -
  IF705_RS13720 (IF705_13660) - 2763173..2763364 (+) 192 WP_000389905.1 hypothetical protein -
  IF705_RS13725 (IF705_13665) - 2763366..2763593 (-) 228 WP_000801108.1 hypothetical protein -
  IF705_RS13730 (IF705_13670) - 2763652..2763915 (+) 264 WP_001124198.1 helix-turn-helix domain-containing protein -
  IF705_RS13735 (IF705_13675) - 2763927..2764088 (+) 162 WP_000066014.1 DUF1270 domain-containing protein -
  IF705_RS13740 (IF705_13680) - 2764180..2764440 (+) 261 WP_000291089.1 DUF1108 family protein -
  IF705_RS13745 (IF705_13685) - 2764450..2764671 (+) 222 WP_000815402.1 DUF2483 family protein -
  IF705_RS13750 (IF705_13690) - 2764664..2765287 (+) 624 WP_000139720.1 DUF1071 domain-containing protein -
  IF705_RS13755 (IF705_13695) ssbA 2765287..2765715 (+) 429 WP_000934385.1 single-stranded DNA-binding protein Machinery gene
  IF705_RS13760 (IF705_13700) - 2765729..2766403 (+) 675 WP_001124438.1 putative HNHc nuclease -
  IF705_RS13765 (IF705_13705) - 2766400..2766549 (+) 150 WP_001081076.1 hypothetical protein -
  IF705_RS13770 (IF705_13710) - 2766542..2766823 (-) 282 WP_000414755.1 hypothetical protein -
  IF705_RS13775 (IF705_13715) - 2766889..2767659 (+) 771 WP_000190254.1 conserved phage C-terminal domain-containing protein -
  IF705_RS13780 (IF705_13720) - 2767669..2768448 (+) 780 WP_000803062.1 ATP-binding protein -
  IF705_RS13785 (IF705_13725) - 2768442..2768600 (+) 159 WP_000256589.1 hypothetical protein -
  IF705_RS13790 (IF705_13730) - 2768613..2768834 (+) 222 WP_001123695.1 DUF3269 family protein -
  IF705_RS13795 (IF705_13735) - 2768844..2769248 (+) 405 WP_000049795.1 DUF1064 domain-containing protein -
  IF705_RS13800 (IF705_13740) - 2769253..2769441 (+) 189 WP_031903462.1 DUF3113 family protein -
  IF705_RS13805 (IF705_13745) - 2769442..2769801 (+) 360 WP_196499663.1 SA1788 family PVL leukocidin-associated protein -
  IF705_RS13810 (IF705_13750) - 2769801..2770055 (+) 255 WP_001649862.1 DUF3310 domain-containing protein -
  IF705_RS13815 (IF705_13755) - 2770055..2770303 (+) 249 WP_196499662.1 SAV1978 family virulence-associated passenger protein -
  IF705_RS13820 (IF705_13760) - 2770317..2770571 (+) 255 WP_196499661.1 DUF1024 family protein -
  IF705_RS13825 (IF705_13765) - 2770558..2770728 (+) 171 WP_000714407.1 hypothetical protein -
  IF705_RS13830 (IF705_13770) - 2770721..2771227 (+) 507 WP_001066446.1 dUTP diphosphatase -
  IF705_RS13835 (IF705_13775) - 2771264..2771500 (+) 237 WP_000195831.1 DUF1381 domain-containing protein -
  IF705_RS13840 (IF705_13780) - 2771525..2771761 (+) 237 WP_000483477.1 hypothetical protein -
  IF705_RS13845 (IF705_13785) - 2771754..2771903 (+) 150 WP_000595234.1 transcriptional activator RinB -
  IF705_RS13850 (IF705_13790) - 2771903..2772103 (+) 201 WP_000265041.1 DUF1514 family protein -
  IF705_RS13855 (IF705_13795) - 2772126..2772587 (+) 462 WP_002955176.1 hypothetical protein -
  IF705_RS13860 (IF705_13800) - 2772702..2773154 (+) 453 WP_000406186.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  IF705_RS13865 (IF705_13805) - 2773161..2773526 (+) 366 WP_000026170.1 HNH endonuclease -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15872.58 Da        Isoelectric Point: 8.4825

>NTDB_id=488804 IF705_RS13755 WP_000934385.1 2765287..2765715(+) (ssbA) [Staphylococcus aureus strain NAS_AN_079]
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=488804 IF705_RS13755 WP_000934385.1 2765287..2765715(+) (ssbA) [Staphylococcus aureus strain NAS_AN_079]
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K0CLZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.704
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

74.648

0.437
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.958

100

0.423
  ssbA Streptococcus mutans UA159

40.845

100

0.408
  ssbB/cilA Streptococcus mitis NCTC 12261

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae Rx1

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae D39

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae R6

39.437

100

0.394
  ssbB/cilA Streptococcus mitis SK321

39.437

100

0.394